sanger-pathogens / assembly_improvementLinks
Improve the quality of a denovo assembly by scaffolding and gap filling
☆57Updated 5 years ago
Alternatives and similar repositories for assembly_improvement
Users that are interested in assembly_improvement are comparing it to the libraries listed below
Sorting:
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- ☆35Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 3 years ago
- ☆37Updated 3 years ago
- Visualize whole genome alignments as linear maps☆74Updated 2 weeks ago
- ☆53Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Synteny Imager☆65Updated last month
- k-mer learning materials☆83Updated 11 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Split Kmer Analysis☆67Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- ☆45Updated 9 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 5 years ago
- Pangenome analysis of eukaryotes.☆21Updated 5 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- finshingTool☆54Updated 9 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆24Updated 7 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- ☆26Updated 6 years ago
- Gene-flank analysis tool☆37Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆66Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago