ryanmelnyk / PyParanoidLinks
Rapid and scalable homolog identification for bacterial genomes
☆33Updated 6 years ago
Alternatives and similar repositories for PyParanoid
Users that are interested in PyParanoid are comparing it to the libraries listed below
Sorting:
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Split Kmer Analysis☆67Updated 3 years ago
- Gene-flank analysis tool☆37Updated last year
- Discover and annotate the virome☆58Updated last week
- Visualize whole genome alignments as linear maps☆74Updated 2 weeks ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆59Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- Recombination-free trees☆63Updated 5 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 7 months ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- ☆53Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- Microbiome classification pipeline☆65Updated 8 months ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Bifrost graph gene caller.☆98Updated 2 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago