thomasp85 / FindMyFriendsLinks
Fast alignment-free pangenome creation and exploration
☆28Updated 5 years ago
Alternatives and similar repositories for FindMyFriends
Users that are interested in FindMyFriends are comparing it to the libraries listed below
Sorting:
- Create your own PanViz visualizations☆20Updated 7 years ago
- Scalable relaxed clock phylogenetic dating☆25Updated last week
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- ☆19Updated last year
- ☆27Updated last year
- ☆18Updated 9 years ago
- R package for microbial pangenomics☆24Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- ☆18Updated 2 weeks ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 6 years ago
- An easy way of MLSTyping your genomes in R.☆18Updated 4 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- R We There Yet?☆31Updated 4 months ago
- De novo VIral Genome Annotator☆23Updated 10 months ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated last month
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Simple R utilities for working with HMMER☆20Updated 10 months ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆24Updated 3 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 8 months ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- D3 based visualisation for comparative genomics☆14Updated 8 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago