thomasp85 / FindMyFriendsLinks
Fast alignment-free pangenome creation and exploration
☆28Updated 5 years ago
Alternatives and similar repositories for FindMyFriends
Users that are interested in FindMyFriends are comparing it to the libraries listed below
Sorting:
- Create your own PanViz visualizations☆21Updated 8 years ago
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆10Updated 3 years ago
- R We There Yet?☆32Updated 8 months ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- ☆18Updated 10 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆14Updated 7 years ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Updated 7 months ago
- ☆19Updated last year
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 7 months ago
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 months ago
- R package for microbial pangenomics☆24Updated 3 years ago
- ☆28Updated last year
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 2 weeks ago
- Simple R utilities for working with HMMER☆19Updated last year
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- ☆18Updated 2 months ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Updated 10 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Python version of PHLAWD☆21Updated last year
- Annotate your metagenome assemblies☆11Updated 7 years ago
- Northern Arizona SNP Pipeline☆20Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago