Alternatives and similar repositories for FindMyFriends

Users that are interested in FindMyFriends are comparing it to the libraries listed below

• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago
• tseemann / mokka
  Annotate your metagenome assemblies
  ☆11Updated 6 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• dib-lab / SSUsearch
  A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis
  ☆10Updated 9 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 8 months ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• reptalex / phylofactor
  ☆27Updated last year
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆22Updated 10 months ago
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆18Updated 3 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated last year
• lorenzgerber / krakenSankey
  a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser
  ☆13Updated 6 years ago
• thomasp85 / PanVizGenerator
  Create your own PanViz visualizations
  ☆20Updated 7 years ago
• aweimann / traitar
  ☆22Updated 2 years ago
• statdivlab / groves
  Tools for analyzing trees
  ☆14Updated last month
• tmbuza / iMAP
  iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
  ☆13Updated last year
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last year
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆18Updated 6 years ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆21Updated 7 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• FredHutch / nf-anvio-pangenome
  Analyze a set of genomes with the anvi'o pangenome pipeline
  ☆17Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 4 years ago
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• pmenzel / taxonomy-tools
  C++ tools for NCBI taxonomy tasks
  ☆11Updated 3 years ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• katcoyte / MK-SpikeSeq
  Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples
  ☆13Updated 4 years ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆21Updated last year