BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.
☆52Jul 1, 2026Updated 2 months ago
Alternatives and similar repositories for BRIG
Users that are interested in BRIG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated last year
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Aug 27, 2026Updated last week
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆70Oct 29, 2020Updated 5 years ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated last year
- In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping☆66Jun 5, 2025Updated last year
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆18May 5, 2026Updated 3 months ago
- A genome alignment and visualization system☆36Nov 15, 2020Updated 5 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 10 months ago
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated last month
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆32Aug 19, 2026Updated 2 weeks ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Aug 11, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mass screening of contigs for antimicrobial and virulence genes☆507Jul 17, 2026Updated last month
- Rapid haploid variant calling and core genome alignment☆592Dec 12, 2025Updated 8 months ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated last year
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 8 months ago
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 6 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆38Apr 24, 2025Updated last year
- Repo for Proksee Cmd Line Tools☆30Feb 22, 2023Updated 3 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆673Aug 7, 2026Updated 3 weeks ago
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 5 months ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Convert genbank files to a swath of other formats☆32Aug 9, 2026Updated 3 weeks ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆27Jul 13, 2023Updated 3 years ago
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆56May 25, 2022Updated 4 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆264Jun 11, 2026Updated 2 months ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆129Oct 30, 2023Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆79Dec 5, 2023Updated 2 years ago
- BSR-Based Allele Calling Algorithm☆150Updated this week
- ☆38Apr 14, 2022Updated 4 years ago
- ☆68Jul 8, 2016Updated 10 years ago
- visualising sequence similarity with Circos☆41Jul 1, 2019Updated 7 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year