KasperSkytte / mmgenome2
Tools for extracting individual genomes from metagenomes
☆17Updated last year
Alternatives and similar repositories for mmgenome2:
Users that are interested in mmgenome2 are comparing it to the libraries listed below
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- ☆22Updated last year
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 3 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- ☆17Updated last month
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆13Updated 5 months ago
- MAG Circularization Method☆33Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 2 years ago
- Working with the outputs of sourmash in R☆26Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 6 months ago
- Detect contigs of complete circular genomes☆22Updated 5 years ago
- ☆20Updated 8 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 7 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated 10 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆26Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 7 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- A simple script to display stuff on a world map with R and ggplot☆17Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 4 months ago
- R package for microbial pangenomics☆21Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year