Development version of Easyfig
☆106Dec 21, 2023Updated 2 years ago
Alternatives and similar repositories for Easyfig
Users that are interested in Easyfig are comparing it to the libraries listed below
Sorting:
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Sep 22, 2022Updated 3 years ago
- Prediction of prophages from bacterial genomes☆81Feb 2, 2026Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆125Oct 30, 2023Updated 2 years ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆103Jun 25, 2023Updated 2 years ago
- An updated pipeline for pangenome investigation☆346Jan 15, 2026Updated 2 months ago
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Sep 20, 2023Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆449Dec 16, 2025Updated 3 months ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Dec 11, 2023Updated 2 years ago
- A toolbox for comparative genomics.☆109May 26, 2021Updated 4 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆121May 21, 2024Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated last month
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆87Dec 15, 2024Updated last year
- Gene cluster comparison figure generator☆637Dec 22, 2025Updated 2 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63May 18, 2020Updated 5 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 3 weeks ago
- Assemble bacterial isolate genomes from Nanopore reads☆129Jan 22, 2025Updated last year
- Bacterial Annotation by Learned Representation of Genes☆60Jan 22, 2021Updated 5 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated last year
- BSR-Based Allele Calling Algorithm☆148Mar 13, 2026Updated last week
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆29Jul 18, 2025Updated 8 months ago
- ☆136Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆612Feb 18, 2026Updated last month
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Jul 13, 2023Updated 2 years ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 4 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Jan 8, 2024Updated 2 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 3 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆105Dec 5, 2025Updated 3 months ago
- High-quality Nanopore-only genome polisher☆69Aug 16, 2024Updated last year
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆79Sep 10, 2025Updated 6 months ago
- geNomad: Identification of mobile genetic elements☆295Nov 10, 2025Updated 4 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago