mjsull / EasyfigLinks
Development version of Easyfig
☆100Updated last year
Alternatives and similar repositories for Easyfig
Users that are interested in Easyfig are comparing it to the libraries listed below
Sorting:
- DDBJ Fast Annotation and Submission Tool☆83Updated last month
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆83Updated 3 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- ☆83Updated 2 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆135Updated 2 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 4 months ago
- ☆79Updated 4 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆106Updated last year
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- Foreign Contamination Screening caller scripts and documentation☆139Updated 6 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 6 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Processing pipeline for pan-genome visulization and exploration☆140Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated last week
- IS mapping software☆56Updated 3 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆130Updated 11 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆120Updated 2 weeks ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆58Updated last year
- A fast whole-genome aligner based on de Bruijn graphs☆152Updated 3 months ago