mjsull / Easyfig
Development version of Easyfig
☆93Updated last year
Alternatives and similar repositories for Easyfig:
Users that are interested in Easyfig are comparing it to the libraries listed below
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆115Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆71Updated last month
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 4 years ago
- ☆80Updated last year
- Metatranscriptomics Tutorial☆62Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Synteny Imager☆60Updated 6 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆91Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- Interactive quality assessment of genome assemblies☆97Updated this week
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆79Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆115Updated last month
- ☆76Updated 4 years ago
- A toolbox for comparative genomics.☆101Updated 3 years ago
- IS mapping software☆53Updated 3 years ago
- Long-read mock community experiments☆104Updated 3 years ago
- Get assembly statistics from FASTA and FASTQ files☆117Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆52Updated 3 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆92Updated 8 months ago
- ☆76Updated 8 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆62Updated 6 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆71Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year
- ONT assembly and Illumina polishing pipeline☆91Updated 4 years ago
- Dfam Transposable Element Tools Docker container.☆88Updated last week