aquaskyline / SOAP3-dp
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneous…
☆31Updated last year
Alternatives and similar repositories for SOAP3-dp:
Users that are interested in SOAP3-dp are comparing it to the libraries listed below
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- CRAM format specification and java API for read data.☆58Updated 6 years ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆52Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆28Updated last year
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆21Updated last year
- Simple convertor from bam to FASTQ☆25Updated 9 years ago
- ☆28Updated last month
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆66Updated 4 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆58Updated last year
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago