aquaskyline / SOAP3-dpLinks
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneous…
☆31Updated last year
Alternatives and similar repositories for SOAP3-dp
Users that are interested in SOAP3-dp are comparing it to the libraries listed below
Sorting:
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Simple convertor from bam to FASTQ☆26Updated 9 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- ☆34Updated 5 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- Master of Pores 2☆23Updated 6 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Updated last week
- MIRA sequence assembler☆29Updated 5 months ago
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆32Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- WDL workflows for variant calling and assembly using ONT☆34Updated 2 weeks ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- ☆22Updated 2 weeks ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago