10XGenomics / HumanColonCancer_VisiumHDLinks
Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling"
☆107Updated 6 months ago
Alternatives and similar repositories for HumanColonCancer_VisiumHD
Users that are interested in HumanColonCancer_VisiumHD are comparing it to the libraries listed below
Sorting:
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆86Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆130Updated last year
- ☆126Updated 3 years ago
- Construct Tumor Transition Zone Microenvironment☆49Updated 6 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- BANKSY: spatial clustering☆130Updated 2 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 5 months ago
- Spatial Cellular Estimator for Tumors☆60Updated this week
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆71Updated 6 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆57Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Codes used in pan-T cell analysis☆64Updated 2 years ago
- Join subcellular Visium HD bins into cells☆130Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆112Updated 8 months ago
- ☆51Updated 4 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆85Updated 11 months ago
- Single Cell Analysis Operations☆13Updated last month
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Updated 4 years ago
- ☆53Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- Codes for the scPLC project☆72Updated 3 years ago
- ☆111Updated 5 years ago
- ☆59Updated last year
- ☆28Updated last year
- Code used to benchmark Xenium☆72Updated last year
- ☆129Updated last year
- These are scripts for pan-cacner B cells analyses.☆57Updated last year