Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling"
☆122Jun 9, 2025Updated last year
Alternatives and similar repositories for HumanColonCancer_VisiumHD
Users that are interested in HumanColonCancer_VisiumHD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Join subcellular Visium HD bins into cells☆147Sep 14, 2026Updated last month
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆83Feb 10, 2026Updated 8 months ago
- ☆33Feb 26, 2025Updated last year
- ☆30Feb 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code used to process the data of the HBCA project☆36Feb 9, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆492Jan 22, 2026Updated 9 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆141Sep 6, 2024Updated 2 years ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆35Nov 30, 2023Updated 2 years ago
- ☆18Sep 13, 2023Updated 3 years ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆104Jul 4, 2026Updated 3 months ago
- 10x Genomics analysis guides files☆48Oct 6, 2026Updated 3 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆23May 13, 2026Updated 5 months ago
- BANKSY: spatial clustering☆171Updated this week
- ☆39Jun 4, 2024Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆60Jan 6, 2025Updated last year
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- ☆37Jan 23, 2024Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆23Mar 25, 2026Updated 7 months ago
- ☆136Aug 23, 2026Updated 2 months ago
- ☆10Jun 1, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆150Jun 25, 2026Updated 4 months ago
- ☆60Feb 23, 2024Updated 2 years ago
- Code associated with the data analysis for Miyoshi & Morabito 2024☆31Jul 8, 2025Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆347Feb 25, 2026Updated 8 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- ☆18Nov 5, 2024Updated last year
- Repository for codes for the HBCA paper☆44Mar 17, 2023Updated 3 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆161Aug 3, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆17Nov 25, 2025Updated 11 months ago
- ☆33May 4, 2025Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆95Jan 19, 2025Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆23Dec 1, 2024Updated last year
- Multiview Intercellular SpaTial modeling framework☆74Jan 15, 2026Updated 9 months ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆20Aug 24, 2023Updated 3 years ago