Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling"
☆115Jun 9, 2025Updated 11 months ago
Alternatives and similar repositories for HumanColonCancer_VisiumHD
Users that are interested in HumanColonCancer_VisiumHD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Join subcellular Visium HD bins into cells☆142May 8, 2026Updated 2 weeks ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆20Feb 13, 2023Updated 3 years ago
- ☆33Feb 26, 2025Updated last year
- ☆17Nov 5, 2024Updated last year
- ☆17Sep 13, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- ☆25Feb 20, 2025Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Mar 25, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆457Jan 22, 2026Updated 4 months ago
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Aug 24, 2023Updated 2 years ago
- ☆36Jun 4, 2024Updated last year
- ☆33May 4, 2025Updated last year
- ☆136Apr 24, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆155Aug 3, 2025Updated 9 months ago
- BANKSY: spatial clustering☆147May 2, 2026Updated 2 weeks ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- ☆58Feb 23, 2024Updated 2 years ago
- ☆17Aug 1, 2023Updated 2 years ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆78Feb 10, 2026Updated 3 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆143Feb 20, 2025Updated last year
- A Toolbox for Spatial Transcriptomics Analysis☆167May 6, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆33Nov 30, 2023Updated 2 years ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆136Sep 6, 2024Updated last year
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 2 months ago
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Aug 3, 2024Updated last year
- This repository is for CellBin research group☆37Updated this week
- ☆130Mar 27, 2022Updated 4 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆20May 13, 2026Updated last week
- ☆26Aug 24, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- Codes for the scPLC project☆75Dec 2, 2022Updated 3 years ago
- Code used to benchmark Xenium☆81Apr 10, 2026Updated last month
- ☆113Sep 16, 2020Updated 5 years ago
- ☆36Jan 23, 2024Updated 2 years ago
- R code used to analyze single cell PDAC data☆42Jun 29, 2024Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Mar 30, 2023Updated 3 years ago