cdanielmachado / framedLinks
framed: a metabolic modeling package for python
☆26Updated 5 years ago
Alternatives and similar repositories for framed
Users that are interested in framed are comparing it to the libraries listed below
Sorting:
- ReFramed: metabolic modeling package☆61Updated last month
- Enzyme-constrained genome-scale models in python☆28Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- cameo - computer aided metabolic engineering & optimization☆120Updated 2 years ago
- Repository of tutorials for The COBRA Toolbox☆23Updated this week
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated last week
- memote – the genome-scale metabolic model test suite☆142Updated 2 months ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 2 years ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- A collection of M models downloaded from published studies☆17Updated 9 years ago
- The BiGG Models website server☆84Updated 5 years ago
- ☆22Updated 5 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆62Updated 8 months ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆29Updated 6 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated last month
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- Python package to study microbial communities using metabolic modeling.☆112Updated 3 weeks ago
- Computation of Microbial Ecosystems in Time and Space☆26Updated this week
- Nanopore Plasmid Sequencing☆34Updated 2 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 3 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated this week
- Python package for building and analyzing models using ModelSEED☆23Updated 6 months ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 8 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆42Updated 3 months ago
- ☆25Updated 2 years ago