SBRG / bigg_modelsLinks
The BiGG Models website server
☆82Updated 5 years ago
Alternatives and similar repositories for bigg_models
Users that are interested in bigg_models are comparing it to the libraries listed below
Sorting:
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆71Updated 3 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- memote – the genome-scale metabolic model test suite☆132Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 3 months ago
- The consensus GEM for Saccharomyces cerevisiae☆109Updated 2 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 4 months ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 3 months ago
- ReFramed: metabolic modeling package☆59Updated last month
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- A Python framework for structural systems biology☆107Updated 4 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆61Updated 4 months ago
- The generic genome-scale metabolic model of Homo sapiens☆115Updated 2 weeks ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆112Updated 3 weeks ago
- cameo - computer aided metabolic engineering & optimization☆115Updated 2 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated last month
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆54Updated 3 months ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆58Updated 3 weeks ago
- Metabolic Engineering Workbench☆40Updated 11 months ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 4 months ago
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Python package to study microbial communities using metabolic modeling.☆100Updated 2 weeks ago
- A container for all enzyme constrained models created by GECKO.☆13Updated 2 years ago
- Computation of Microbial Ecosystems in Time and Space☆24Updated last month
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆42Updated 3 months ago
- Python package for building and analyzing models using ModelSEED☆23Updated last month