SBRG / bigg_modelsLinks
The BiGG Models website server
☆85Updated 6 years ago
Alternatives and similar repositories for bigg_models
Users that are interested in bigg_models are comparing it to the libraries listed below
Sorting:
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆121Updated 3 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated 3 weeks ago
- memote – the genome-scale metabolic model test suite☆143Updated 3 months ago
- D3.js based visualizations of cobrapy metabolic models☆48Updated 5 years ago
- The consensus GEM for Saccharomyces cerevisiae☆113Updated last week
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆118Updated 3 weeks ago
- Enzyme-constrained genome-scale models in python☆29Updated 2 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 6 months ago
- The generic genome-scale metabolic model of Homo sapiens☆122Updated 2 months ago
- Computation of Microbial Ecosystems in Time and Space☆26Updated 3 weeks ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last week
- ReFramed: metabolic modeling package☆62Updated 2 months ago
- nucleic acid folding☆108Updated 3 months ago
- Repository of tutorials for The COBRA Toolbox☆23Updated last week
- Analysis of ensembles of metabolic network reconstructions☆21Updated last month
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆76Updated 3 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆64Updated last week
- Metabolic Engineering Workbench☆40Updated last year
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated 2 weeks ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆207Updated this week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 9 months ago
- WebLogo 3: Sequence Logos redrawn☆152Updated 6 months ago
- Create force-directed graphs of RNA secondary structures.☆109Updated 5 years ago
- Build, share, and embed visualizations of metabolic pathways.☆228Updated last year
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- framed: a metabolic modeling package for python☆26Updated 6 years ago