cdanielmachado / cooccurrence
Supplementary data for co-occurrence manuscript
☆10Updated 5 years ago
Alternatives and similar repositories for cooccurrence:
Users that are interested in cooccurrence are comparing it to the libraries listed below
- Teaching materials for SymbNET course: from MAGs to GEMs☆13Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 2 months ago
- KEGG Module Evaluation Tool☆28Updated last year
- Pipeline for major biological analyses.☆34Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆25Updated last week
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- ☆19Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 6 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆37Updated 2 months ago
- ☆38Updated 2 months ago
- ☆18Updated 4 years ago
- ☆29Updated this week
- Pipelines used in the lab.☆11Updated 4 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- metabolic heatmap☆19Updated 5 years ago
- ☆31Updated last year
- BiG-MEx implementation as Docker images and R packages☆12Updated 3 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated 10 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- ☆28Updated last week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 6 months ago
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆21Updated 3 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆45Updated 2 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆46Updated last month
- ☆16Updated 3 years ago