cdanielmachado / cooccurrence
Supplementary data for co-occurrence manuscript
☆10Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for cooccurrence
- ☆35Updated this week
- KEGG Module Evaluation Tool☆26Updated 11 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆13Updated 10 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- Pipeline for major biological analyses.☆34Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- ☆18Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated this week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- ☆25Updated 8 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆14Updated last week
- Pipelines used in the lab.☆10Updated 3 weeks ago
- ☆19Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆21Updated 7 months ago
- Prophage Activity Estimator☆26Updated 5 months ago
- ☆18Updated 2 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 9 months ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆11Updated 3 years ago
- ☆30Updated 10 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆37Updated 2 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- ☆23Updated 8 months ago
- ☆43Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆20Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆29Updated 8 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 3 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆13Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆24Updated last month
- ☆14Updated 2 months ago