This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
☆68Jan 6, 2026Updated 3 months ago
Alternatives and similar repositories for ModelSEEDDatabase
Users that are interested in ModelSEEDDatabase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆44Jul 9, 2025Updated 9 months ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆280Apr 2, 2026Updated last week
- The BiGG Models website server☆89Nov 7, 2019Updated 6 years ago
- cameo - computer aided metabolic engineering & optimization☆123Nov 7, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- CarveMe: genome-scale metabolic model reconstruction☆199Sep 12, 2025Updated 6 months ago
- Standard reaction Gibbs energy estimation for biochemical reactions☆19Dec 10, 2018Updated 7 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆30Mar 5, 2019Updated 7 years ago
- ReFramed: metabolic modeling package☆63Sep 16, 2025Updated 6 months ago
- Python package to study microbial communities using metabolic modeling.☆124Mar 31, 2026Updated last week
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated last month
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Build, share, and embed visualizations of metabolic pathways.☆236Aug 15, 2024Updated last year
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆23Aug 28, 2020Updated 5 years ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆556Mar 26, 2026Updated 2 weeks ago
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 7 months ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 2 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆124Mar 25, 2026Updated 2 weeks ago
- Python package for building and analyzing models using ModelSEED☆26Feb 11, 2026Updated last month
- A collection of M models downloaded from published studies☆17Feb 18, 2016Updated 10 years ago
- Repository of tutorials for The COBRA Toolbox☆25Mar 16, 2026Updated 3 weeks ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆50Mar 23, 2026Updated 2 weeks ago
- SMETANA: a tool to analyse interactions in microbial communities☆67May 6, 2025Updated 11 months ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- D3.js based visualizations of cobrapy metabolic models☆50Mar 10, 2020Updated 6 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 12, 2024Updated last year
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆12Aug 1, 2017Updated 8 years ago
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆63Apr 2, 2026Updated last week
- The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installat…☆21Jan 3, 2013Updated 13 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆257Jul 27, 2024Updated last year
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Tutorial on how to use Ginkgo AI embedding APIs for scientific problems☆19Nov 22, 2024Updated last year
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 6 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Oct 21, 2022Updated 3 years ago