ModelSEED / ModelSEEDDatabaseLinks
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
☆64Updated 2 weeks ago
Alternatives and similar repositories for ModelSEEDDatabase
Users that are interested in ModelSEEDDatabase are comparing it to the libraries listed below
Sorting:
- Python package to study microbial communities using metabolic modeling.☆113Updated 2 weeks ago
- memote – the genome-scale metabolic model test suite☆143Updated 4 months ago
- Python package for building and analyzing models using ModelSEED☆24Updated 8 months ago
- ReFramed: metabolic modeling package☆62Updated 3 months ago
- CarveMe: genome-scale metabolic model reconstruction☆190Updated 3 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆92Updated 4 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆120Updated 2 weeks ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆30Updated 6 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆79Updated last month
- SMETANA: a tool to analyse interactions in microbial communities☆65Updated 7 months ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆23Updated 3 weeks ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last week
- Enzyme-constrained genome-scale models in python☆30Updated 2 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 months ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 3 years ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆106Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- sensitive and precise assembly of short sequencing reads☆163Updated last year
- Similarity networks of biosynthetic gene clusters☆146Updated last week
- Discovery of conserved gene clusters in multiple genomes☆119Updated 7 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆119Updated last week
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆61Updated 9 months ago
- BGC Detection and Classification Using Deep Learning☆157Updated 2 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆199Updated last week
- MGnify genome analysis pipeline☆109Updated this week
- Find clustered hits from a BLAST search☆128Updated last month
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆176Updated 4 months ago
- antiSMASH☆238Updated last month