Mackinac: A bridge between ModelSEED and COBRApy
☆19Aug 20, 2018Updated 7 years ago
Alternatives and similar repositories for mackinac
Users that are interested in mackinac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Updated this week
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 3 months ago
- Computation of Microbial Ecosystems in Time and Space☆28Updated this week
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆28Jul 12, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis of ensembles of metabolic network reconstructions☆22May 20, 2026Updated 2 months ago
- Simple swig bindings for the GNU Linear Programming Kit☆30Jul 2, 2026Updated 3 weeks ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆127Nov 7, 2022Updated 3 years ago
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆26Jul 15, 2024Updated 2 years ago
- ☆19Aug 29, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A container for all enzyme constrained models created by GECKO.☆17Jul 4, 2022Updated 4 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆69Updated this week
- memote – the genome-scale metabolic model test suite☆149Aug 14, 2025Updated 11 months ago
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 5 months ago
- ☆10Jul 4, 2019Updated 7 years ago
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆91Jul 7, 2026Updated 3 weeks ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆13Aug 1, 2017Updated 8 years ago
- ☆27Dec 20, 2023Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆52Mar 10, 2020Updated 6 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 26, 2026Updated 2 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆131Jul 18, 2026Updated last week
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 9 years ago
- CarveMe: genome-scale metabolic model reconstruction☆214Sep 12, 2025Updated 10 months ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆286Updated this week
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆578Jul 20, 2026Updated last week
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆28Jul 6, 2023Updated 3 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated 11 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- ☆15Dec 26, 2022Updated 3 years ago
- optlang - sympy based mathematical programming language☆271Jun 2, 2026Updated last month