Alternatives and similar repositories for mackinac

Users that are interested in mackinac are comparing it to the libraries listed below

• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆63Updated 4 months ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆24Updated this week
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆65Updated 3 weeks ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆143Updated 5 months ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆48Updated last month
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆50Updated 5 years ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆115Updated this week
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆26Updated last month
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 7 years ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆121Updated 2 weeks ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆25Updated 9 months ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆30Updated 2 years ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated 2 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated last week
• latendre / PythonCyc
  ☆23Updated 5 years ago
• opencobra / Medusa
  Analysis of ensembles of metabolic network reconstructions
  ☆21Updated 2 weeks ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆30Updated 6 years ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆123Updated 3 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆62Updated last month
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆33Updated 4 years ago
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆13Updated 11 months ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• SBRG / bigg_models
  The BiGG Models website server
  ☆88Updated 6 years ago
• danielriosgarza / MAMBO
  ☆10Updated 6 years ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 6 years ago
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆17Updated 9 years ago
• jensenlab / BacterAI
  ☆27Updated 2 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆13Updated 2 years ago