Toolbox for comparative genomics of MAGs
☆90Apr 28, 2026Updated last week
Alternatives and similar repositories for enrichM
Users that are interested in enrichM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆225Mar 24, 2026Updated last month
- ☆17May 19, 2022Updated 3 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆257Mar 20, 2025Updated last year
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆72Feb 9, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆597Apr 21, 2026Updated 2 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 20, 2026Updated 2 weeks ago
- The NFDI4Microbiota Knowledge Base, for visualizing dev branch: https://kb-dev.nfdi4microbiota.de☆27Apr 23, 2026Updated last week
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- geNomad: Identification of mobile genetic elements☆304Mar 29, 2026Updated last month
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- CLI tool to annotate genes with KOfam☆94Jun 6, 2023Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆51Nov 6, 2025Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆162Apr 23, 2025Updated last year
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 2 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆184Mar 17, 2026Updated last month
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- SemiBin: metagenomics binning with self-supervised deep learning☆161Apr 25, 2026Updated last week
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated last month
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆89Dec 27, 2024Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆468Jul 28, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆27Jan 30, 2025Updated last year
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆37Apr 7, 2026Updated 3 weeks ago
- More scalable dereplication for metagenome assembled genomes☆80Mar 8, 2026Updated last month
- Variational autoencoder for metagenomic binning☆322Apr 27, 2026Updated last week
- DAS Tool☆173May 2, 2024Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Apr 16, 2026Updated 2 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆148Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆636Feb 18, 2026Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆74Jul 13, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rapid comparison and dereplication of genomes☆336Nov 10, 2025Updated 5 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- sensitive and precise assembly of short sequencing reads☆167Oct 11, 2024Updated last year
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆260Jul 27, 2024Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Updated this week
- MAG Circularization Method☆33Nov 4, 2025Updated 6 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆212Mar 5, 2026Updated 2 months ago