Toolbox for comparative genomics of MAGs
☆91Jul 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for enrichM
Users that are interested in enrichM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆231Mar 24, 2026Updated 4 months ago
- ☆17May 19, 2022Updated 4 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆275Mar 20, 2025Updated last year
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆71Feb 9, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- The NFDI4Microbiota Knowledge Base, for visualizing dev branch: https://kb-dev.nfdi4microbiota.de☆28May 9, 2026Updated 3 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆617May 20, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- GraftM - Rapid community profiles from metagenomes☆56Nov 6, 2025Updated 9 months ago
- CLI tool to annotate genes with KOfam☆106Jun 6, 2023Updated 3 years ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 5 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆168Apr 23, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Aug 5, 2026Updated last week
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- Strain resolver for metagenomics☆82Aug 2, 2024Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆151Mar 20, 2025Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆234Jul 29, 2026Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆475Jul 28, 2023Updated 3 years ago
- ☆29Aug 2, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 3 months ago
- DAS Tool☆177May 2, 2024Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Updated this week
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆665Aug 7, 2026Updated last week
- Rapid comparison and dereplication of genomes☆351Jul 16, 2026Updated 3 weeks ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆273May 13, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- sensitive and precise assembly of short sequencing reads☆169Oct 11, 2024Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Jul 29, 2026Updated 2 weeks ago
- MAG Circularization Method☆33Nov 4, 2025Updated 9 months ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆219Jul 31, 2026Updated 2 weeks ago
- Open prediction of Polysaccharide Utilisation Loci (PUL)☆27Apr 22, 2020Updated 6 years ago