Toolbox for comparative genomics of MAGs
☆88Feb 24, 2026Updated last week
Alternatives and similar repositories for enrichM
Users that are interested in enrichM are comparing it to the libraries listed below
Sorting:
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆219Jan 27, 2025Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- ☆16May 19, 2022Updated 3 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆320Feb 19, 2026Updated last week
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆48Nov 6, 2025Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆291Nov 10, 2025Updated 3 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆582Feb 21, 2026Updated last week
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆70Feb 9, 2025Updated last year
- CLI tool to annotate genes with KOfam☆89Jun 6, 2023Updated 2 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆160Apr 23, 2025Updated 10 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Jan 7, 2026Updated last month
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆32Jan 19, 2026Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆226Jan 20, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆155Feb 19, 2026Updated last week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆460Jul 28, 2023Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated 11 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- Variational autoencoder for metagenomic binning☆317Feb 23, 2026Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆181Updated this week
- KEGG Module Evaluation Tool☆32Nov 15, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Jan 5, 2026Updated last month
- More scalable dereplication for metagenome assembled genomes☆78Dec 17, 2025Updated 2 months ago
- DAS Tool☆168May 2, 2024Updated last year
- ☆26Jan 30, 2025Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Updated this week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆256Jul 27, 2024Updated last year
- The NFDI4Microbiota Knowledge Base, for visualizing dev branch: https://kb-dev.nfdi4microbiota.de☆26Updated this week
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- sensitive and precise assembly of short sequencing reads☆163Oct 11, 2024Updated last year
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- A complete pipeline for metagenomic analysis☆440Updated this week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year