cdanielmachado / embl_gemsLinks
EMBL GEMs: A collection of GEnome-scale Models for bacterial species
☆30Updated 6 years ago
Alternatives and similar repositories for embl_gems
Users that are interested in embl_gems are comparing it to the libraries listed below
Sorting:
- Python package to study microbial communities using metabolic modeling.☆114Updated last week
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆92Updated 5 months ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆23Updated last month
- SMETANA: a tool to analyse interactions in microbial communities☆66Updated 8 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆65Updated last week
- From annotated genomes to metabolic screening in large scale microbiotas☆68Updated 8 months ago
- PaperBLAST: find papers about a protein or its homologs☆50Updated last month
- PHANOTATE: a gene caller for phages.☆80Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated 3 weeks ago
- Python package for building and analyzing models using ModelSEED☆25Updated 9 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆193Updated 4 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- Find clustered hits from a BLAST search☆130Updated this week
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 3 years ago
- Supporting code for uncultivated gut virus manuscript☆78Updated 2 years ago
- ReFramed: metabolic modeling package☆62Updated 4 months ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last year
- CLI tool to annotate genes with KOfam☆87Updated 2 years ago
- Exploring the "dusk matter" of the RNA virosphere☆36Updated 3 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- Pipelines used in the lab.☆15Updated 9 months ago
- MGnify genome analysis pipeline☆108Updated last week
- ☆42Updated 7 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆38Updated last year
- sensitive and precise assembly of short sequencing reads☆163Updated last year
- Pipeline for major biological analyses.☆36Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 2 months ago
- Similarity networks of biosynthetic gene clusters☆149Updated last week