The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
☆293Oct 29, 2026Updated this week
Alternatives and similar repositories for cobratoolbox
Users that are interested in cobratoolbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MATLAB Development Tools☆28Sep 27, 2024Updated 2 years ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 3 years ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆594Oct 12, 2026Updated 3 weeks ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis. This repository holds RAVEN 2.x; RAVEN 3 is developed in …☆135Oct 15, 2026Updated 2 weeks ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆71Oct 6, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repository of tutorials for The COBRA Toolbox☆25Aug 24, 2026Updated 2 months ago
- memote – the genome-scale metabolic model test suite☆152Aug 14, 2025Updated last year
- The BiGG Models website server☆93Nov 7, 2019Updated 6 years ago
- Toolbox for including enzyme constraints on a genome-scale model. This repository holds GECKO 3.x; GECKO 4 is developed in CompMetEng/GEC…☆95Oct 16, 2026Updated 2 weeks ago
- A container for all enzyme constrained models created by GECKO.☆19Sep 24, 2026Updated last month
- CarveMe: genome-scale metabolic model reconstruction☆224Sep 12, 2025Updated last year
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated 5 months ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The standard for open-source GEMs on GitHub☆22Oct 5, 2026Updated 3 weeks ago
- framed: a metabolic modeling package for python☆25Nov 7, 2019Updated 6 years ago
- The generic genome-scale metabolic model of Homo sapiens☆175Updated this week
- The consensus GEM for Saccharomyces cerevisiae☆137Oct 23, 2026Updated last week
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 5 years ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆13Aug 1, 2017Updated 9 years ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- Python package to study microbial communities using metabolic modeling.☆140Updated this week
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A collection of M models downloaded from published studies☆18Feb 18, 2016Updated 10 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆79May 6, 2025Updated last year
- ☆23Aug 28, 2020Updated 6 years ago
- ☆15Dec 26, 2022Updated 3 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆274May 13, 2026Updated 5 months ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Oct 29, 2019Updated 7 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Sep 22, 2026Updated last month
- 代谢网络模型构建和使用实操☆33Mar 18, 2023Updated 3 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆229Oct 27, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆21Aug 29, 2025Updated last year
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆49Jul 27, 2026Updated 3 months ago
- ☆19May 8, 2024Updated 2 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆71Updated this week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆40Jan 11, 2019Updated 7 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆13Nov 28, 2023Updated 2 years ago
- ReFramed: metabolic modeling package☆63Jun 26, 2026Updated 4 months ago