Alternatives and similar repositories for cobratoolbox

Users that are interested in cobratoolbox are comparing it to the libraries listed below

• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆142Updated last month
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆113Updated 3 weeks ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• opencobra / cobrapy
  COBRApy is a package for constraint-based modeling of metabolic networks.
  ☆520Updated last month
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆113Updated last week
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆122Updated 3 weeks ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆61Updated 3 weeks ago
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆298Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆78Updated 2 weeks ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆63Updated 8 months ago
• zakandrewking / escher
  Build, share, and embed visualizations of metabolic pathways.
  ☆226Updated last year
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆186Updated 3 weeks ago
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆247Updated last year
• SysBioChalmers / ecModels
  A container for all enzyme constrained models created by GECKO.
  ☆14Updated 3 years ago
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆400Updated 2 weeks ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆120Updated 2 years ago
• klamt-lab / autopacmen
  Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
  ☆15Updated 7 months ago
• EddyRivasLab / hmmer
  HMMER: biological sequence analysis using profile HMMs
  ☆382Updated 2 weeks ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 7 years ago
• antismash / antismash
  antiSMASH
  ☆223Updated last month
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated 2 years ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆111Updated this week
• BioSystemsUM / troppo
  Reconstruction algorithms for Python
  ☆25Updated 11 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆47Updated 5 years ago
• segrelab / cometspy
  Python interface for running COMETS simulations and analyzing the results
  ☆14Updated 3 weeks ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆23Updated this week
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆25Updated 2 months ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆251Updated 3 weeks ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago