Alternatives and similar repositories for RAVEN

Users that are interested in RAVEN are comparing it to the libraries listed below

• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆133Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆76Updated 2 months ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated 2 months ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆63Updated 5 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆118Updated last month
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆104Updated last month
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆175Updated 3 months ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆112Updated 8 months ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆23Updated 2 months ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆184Updated 2 weeks ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 4 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆73Updated 3 years ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆123Updated this week
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆21Updated 2 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆146Updated last year
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆242Updated 11 months ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• paulstothard / sequence_manipulation_suite
  A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipu…
  ☆77Updated 8 months ago
• antismash / antismash
  antiSMASH
  ☆215Updated 2 weeks ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆156Updated 9 months ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆28Updated 6 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• biocore / mmvec
  Neural networks for microbe-metabolite interaction analysis
  ☆121Updated 2 years ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆108Updated this week
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆137Updated this week
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆153Updated 2 months ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆109Updated 3 months ago
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆16Updated 9 years ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆92Updated 2 years ago