The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
☆131Jul 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for RAVEN
Users that are interested in RAVEN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The generic genome-scale metabolic model of Homo sapiens☆172Jul 19, 2026Updated 3 weeks ago
- Toolbox for including enzyme constraints on a genome-scale model.☆91Jul 7, 2026Updated last month
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆286Jul 28, 2026Updated 2 weeks ago
- The consensus GEM for Saccharomyces cerevisiae☆129Jul 1, 2026Updated last month
- A container for all enzyme constrained models created by GECKO.☆17Jul 4, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CarveMe: genome-scale metabolic model reconstruction☆216Sep 12, 2025Updated 10 months ago
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 6 months ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆579Updated this week
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆70Updated this week
- The BiGG Models website server☆91Nov 7, 2019Updated 6 years ago
- memote – the genome-scale metabolic model test suite☆151Aug 14, 2025Updated 11 months ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆219Jul 31, 2026Updated last week
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 5 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated 2 months ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- agent based modelling☆39Aug 28, 2024Updated last year
- ☆24Oct 19, 2023Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆52Mar 10, 2020Updated 6 years ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 9 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The standard for open-source GEMs on GitHub☆22Jul 2, 2026Updated last month
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated last month
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 2 months ago
- A Python framework for structural systems biology☆109Dec 7, 2020Updated 5 years ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 7 years ago
- cameo - computer aided metabolic engineering & optimization☆127Nov 7, 2022Updated 3 years ago
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆26Feb 6, 2026Updated 6 months ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆199Jul 4, 2023Updated 3 years ago
- 代谢网络模型构建和使用实操☆33Mar 18, 2023Updated 3 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 9 years ago
- ☆18Jul 27, 2026Updated 2 weeks ago
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆17May 14, 2023Updated 3 years ago
- An efficient tool for large-scale correlation network analysis☆15Dec 27, 2024Updated last year