Alternatives and similar repositories for RAVEN

Users that are interested in RAVEN are comparing it to the libraries listed below

• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆143Updated 3 months ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆62Updated 2 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated 3 weeks ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆64Updated this week
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆187Updated 2 months ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆195Updated this week
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆113Updated last week
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆134Updated 4 months ago
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆253Updated last year
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆117Updated last year
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆24Updated 7 months ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆123Updated 3 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• antismash / antismash
  antiSMASH
  ☆236Updated 3 weeks ago
• m-jahn / genome-scale-models
  Genome scale metabolic models in SBML format
  ☆10Updated 4 years ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆162Updated last year
• paulstothard / sequence_manipulation_suite
  A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipu…
  ☆85Updated last year
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆90Updated 3 months ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆109Updated this week
• biobakery / graphlan
  High-quality circular representations of taxonomic and phylogenetic trees
  ☆105Updated last year
• biocore / mmvec
  Neural networks for microbe-metabolite interaction analysis
  ☆125Updated 3 years ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆142Updated last month
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆131Updated last year
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆178Updated 2 months ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆103Updated last year
• SBRG / iModulonMiner
  Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
  ☆23Updated last year
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 7 months ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆30Updated 6 years ago