Alternatives and similar repositories for BacArena

Users that are interested in BacArena are comparing it to the libraries listed below

• meringlab / FlashWeave.jl
  Inference of microbial interaction networks from large-scale heterogeneous abundance data
  ☆90Updated 4 months ago
• BradyAJohnston / plasmapR
  Creating plasmid maps inside ggplot.
  ☆89Updated 5 months ago
• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆23Updated 3 years ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆78Updated 6 months ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆52Updated 8 years ago
• Chang-Yu-Chang / ecoprospector
  Python package simulating artificial selection on microbial communities
  ☆14Updated 2 years ago
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 4 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆42Updated last year
• sprouffske / growthcurver
  Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…
  ☆48Updated 4 years ago
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆37Updated 3 years ago
• bacteria-archaea-traits / bacteria-archaea-traits
  A synthesis of bacterial and archaeal phenotypic trait data
  ☆35Updated 2 years ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 6 months ago
• ramellose / CoNetinR
  Implementation of CoNet in R
  ☆16Updated 6 years ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆122Updated last week
• EBI-Metagenomics / MGnifyR
  R package for searching, downloading and analysis of EBI MGnify metagenomics data
  ☆23Updated last month
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆51Updated 2 weeks ago
• EvaYiwenWang / PLSDAbatch_workflow
  ☆18Updated 2 years ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆25Updated 3 weeks ago
• victoriapascal / gutsmash
  gutSMASH
  ☆57Updated 4 months ago
• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆34Updated 10 months ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated 5 months ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆28Updated last year
• microbiome / mia
  Microbiome analysis
  ☆54Updated this week
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆71Updated 3 months ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆55Updated 7 months ago
• gerberlab / MDSINE2
  ☆32Updated 2 weeks ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆67Updated 5 years ago
• zhouhj1994 / LinDA
  ☆39Updated 2 years ago
• katholt / plotTree
  ☆68Updated 9 years ago
• biocore / gemelli
  Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…
  ☆85Updated 3 months ago