euba / BacArenaLinks
agent based modelling
☆32Updated 10 months ago
Alternatives and similar repositories for BacArena
Users that are interested in BacArena are comparing it to the libraries listed below
Sorting:
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆86Updated last year
- Python package simulating artificial selection on microbial communities☆14Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- Robust Aitchison PCA from sparse count data☆35Updated 2 years ago
- Creating plasmid maps inside ggplot.☆87Updated 7 months ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- gutSMASH☆55Updated 7 months ago
- Implementation of CoNet in R☆16Updated 5 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 3 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆21Updated 2 years ago
- Simple R utilities for working with HMMER☆20Updated 9 months ago
- ☆56Updated last week
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆21Updated 2 months ago
- functions for analyzing phyloseq data☆28Updated 5 months ago
- diversity estimation under ecological networks☆84Updated 3 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 8 months ago
- Working with the outputs of sourmash in R☆27Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 2 months ago
- Plot microbiome time series in parallel☆26Updated last year
- ☆37Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year