euba / BacArena
agent based modelling
☆27Updated 7 months ago
Alternatives and similar repositories for BacArena:
Users that are interested in BacArena are comparing it to the libraries listed below
- Plot microbiome time series in parallel☆26Updated last year
- COmpositional Zero-Inflated Network Estimation☆10Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 11 months ago
- Implementation of CoNet in R☆15Updated 5 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆22Updated 2 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 10 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 10 months ago
- ☆26Updated last year
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆80Updated 9 months ago
- ☆11Updated 5 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆33Updated last year
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- Simple R utilities for working with HMMER☆18Updated 5 months ago
- Multinomial Logistic-Normal Models (really fast)☆20Updated last month
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- Python package simulating artificial selection on microbial communities☆14Updated last year
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆21Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 8 months ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆22Updated last year
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆16Updated 2 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- ☆11Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆55Updated 6 months ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆12Updated last month