euba / BacArena
agent based modelling
☆26Updated 3 weeks ago
Related projects: ⓘ
- A synthesis of bacterial and archaeal phenotypic trait data☆30Updated 10 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆20Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆26Updated 8 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 2 years ago
- Plot microbiome time series in parallel☆23Updated 10 months ago
- Tutorial on Bayesian phylogenetic analysis☆44Updated 6 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆33Updated 5 months ago
- Python package simulating artificial selection on microbial communities☆14Updated last year
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆71Updated 3 months ago
- Simple R utilities for working with HMMER☆18Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 5 months ago
- ☆26Updated 6 months ago
- ☆17Updated last year
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆14Updated 6 months ago
- Implementation of CoNet in R☆14Updated 4 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆21Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated 3 months ago
- A comprehensive and customizable R package for microbiome analysis.☆20Updated last year
- Multinomial Logistic-Normal Models (really fast)☆20Updated 3 months ago
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- ☆12Updated 5 years ago
- PanGenomePipeline☆15Updated 5 months ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆15Updated last week
- SHallow shOtGUN profiler☆54Updated 2 years ago
- ☆35Updated 9 months ago
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆15Updated 5 months ago
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆19Updated this week
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆15Updated 3 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆12Updated last month
- Metagenomics calibration R package☆18Updated 2 years ago