Alternatives and similar repositories for HiOrCo

Users that are interested in HiOrCo are comparing it to the libraries listed below

• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆64Updated 5 months ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆106Updated 2 months ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆121Updated 10 months ago
• cdanielmachado / cooccurrence
  Supplementary data for co-occurrence manuscript
  ☆10Updated 5 years ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆31Updated last month
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated this week
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆184Updated 3 weeks ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆59Updated last year
• borenstein-lab / microbiome-metabolome-curated-data
  ☆74Updated 11 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆74Updated 2 years ago
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆158Updated last year
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆129Updated last month
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆62Updated 4 years ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆187Updated this week
• segalab / SGVFinder
  ☆32Updated 2 years ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆58Updated last year
• xinehc / args_oap
  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…
  ☆60Updated 6 months ago
• emmamglass / reconstructor
  This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…
  ☆23Updated 3 months ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 6 months ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆35Updated 2 years ago
• nearinj / Comparison_of_DA_microbiome_methods
  ☆57Updated last year
• mgtools / PhyloMint
  Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
  ☆15Updated 4 years ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆31Updated 3 years ago
• ziyewang / MetaBinner
  ☆58Updated last year
• tamascogustavo / chimera
  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆18Updated 2 years ago
• franciscozorrilla / SymbNET
  Teaching materials for SymbNET course: from MAGs to GEMs
  ☆14Updated last year
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆149Updated 3 weeks ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• biocore / mmvec
  Neural networks for microbe-metabolite interaction analysis
  ☆124Updated 2 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆85Updated last month