PhiSpace for continuous phenotyping single-cell and spatial transcriptomics data
☆10Feb 23, 2026Updated last week
Alternatives and similar repositories for PhiSpace
Users that are interested in PhiSpace are comparing it to the libraries listed below
Sorting:
- ☆26Aug 10, 2023Updated 2 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆12Dec 4, 2023Updated 2 years ago
- Repository for R and Python packages and reproduction codes in Weighted Conformalized Selection paper☆11Jul 21, 2023Updated 2 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- ☆10Jul 9, 2024Updated last year
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 3 months ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- ☆14Oct 24, 2025Updated 4 months ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆12May 10, 2025Updated 9 months ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated last month
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Feb 28, 2026Updated last week
- New computational framework to process and analyze KAS-seq and spKAS-seq data.☆15Dec 5, 2023Updated 2 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆11May 31, 2024Updated last year
- A formula interface for model-first PCA; PCA for the people!☆13Aug 23, 2024Updated last year
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆17Jun 21, 2024Updated last year
- ☆13Dec 2, 2024Updated last year
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Course Notes for PSYC 621 (Bayesian Data Analaysis, 2019 Fall)☆15Jun 5, 2020Updated 5 years ago
- ☆15Feb 20, 2025Updated last year
- mbImpute: an accurate and robust imputation method for microbiome data☆11Aug 19, 2021Updated 4 years ago
- R package for dependence modelling with factor copulas☆12Apr 13, 2020Updated 5 years ago
- shadowrocket GFWlist 配置文件☆13Nov 15, 2022Updated 3 years ago
- ☆11Jun 25, 2024Updated last year
- Counterfactual Inference by Machine Learning and Attribution Models☆14Aug 24, 2023Updated 2 years ago
- ☆11May 24, 2024Updated last year
- Koi Fish Pond☆14Mar 10, 2011Updated 14 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆15Mar 1, 2026Updated last week
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- ☆13Jul 11, 2024Updated last year
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆16Apr 7, 2024Updated last year
- ☆13Apr 20, 2023Updated 2 years ago
- Statistical Tools for Covariance Analysis☆14Sep 21, 2025Updated 5 months ago