grunwaldlab / effectRLinks
An R package to call oomycete effectors
☆11Updated 2 years ago
Alternatives and similar repositories for effectR
Users that are interested in effectR are comparing it to the libraries listed below
Sorting:
- Open source short linear motif discovery and sequence analysis☆25Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- gutSMASH☆56Updated last month
- From metagenomes to epitopes and beyond☆12Updated this week
- A QIIME 2 plugin for interaction with the Greengenes2 database☆34Updated last year
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆27Updated 3 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated 2 months ago
- Creating plasmid maps inside ggplot.☆89Updated 2 months ago
- Fast and accurate sequence demultiplexing☆28Updated 5 months ago
- metabolic heatmap☆21Updated 6 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 5 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago
- ☆67Updated 9 years ago
- An R package designed for drawing gene arrow maps☆92Updated last month
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 3 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- ☆18Updated 2 years ago
- ☆24Updated 7 months ago
- An interactive web-tool for RNA-seq analysis☆70Updated 8 months ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆87Updated 3 weeks ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆19Updated 5 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 2 years ago