britolab / GCN-HGT
Prediction of horizontal gene transfer (HGT) using graph convolutional network
☆12Updated 3 years ago
Alternatives and similar repositories for GCN-HGT:
Users that are interested in GCN-HGT are comparing it to the libraries listed below
- GCN classifier for phage taxanomy classification☆31Updated 5 months ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 5 months ago
- Local version of the virus identification and analysis web server (tool set)☆49Updated 2 weeks ago
- The viral taxonomic assignment pipeline☆18Updated last month
- Viral protein family functional prediction using protein language models☆19Updated 10 months ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 5 months ago
- Graph convolutional neural network for host prediction☆19Updated 2 years ago
- Supplementary data for co-occurrence manuscript☆10Updated 5 years ago
- ☆34Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆10Updated last month
- ☆30Updated 2 months ago
- Detection of phage RBPs based on protein domains and machine learning☆23Updated 2 months ago
- ☆26Updated last year
- ☆52Updated last year
- Host prediction for phages☆25Updated 5 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆33Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- Pipeline for major biological analyses.☆34Updated 3 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 8 months ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆30Updated 6 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated 3 weeks ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆61Updated 4 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆19Updated 2 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆63Updated 7 months ago
- ☆31Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated last week