ratschlab / he2stLinks
Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"
☆10Updated 5 months ago
Alternatives and similar repositories for he2st
Users that are interested in he2st are comparing it to the libraries listed below
Sorting:
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆31Updated 6 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆43Updated 4 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 7 months ago
- ☆14Updated 8 months ago
- Multimodality Fusion Subtyping (Nature Communications)☆28Updated 6 months ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆57Updated last week
- ☆34Updated 3 years ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆22Updated 2 weeks ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated last year
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Updated 7 months ago
- ☆35Updated last month
- ☆13Updated 3 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆12Updated 2 months ago
- ☆55Updated 2 years ago
- Accessible and interoperable whole slide image analysis☆146Updated last week
- ☆34Updated 4 years ago
- Reproducing the experiments of the DestVI paper☆20Updated 3 years ago
- single cell analysis of treatment naive and treated human PDAC☆25Updated 3 years ago
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Updated 2 years ago
- ☆13Updated 2 months ago
- ☆46Updated 3 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆80Updated last year
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆35Updated last week
- ☆22Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆44Updated last month
- ☆50Updated 2 weeks ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆15Updated 2 months ago