Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"
☆13May 12, 2026Updated 2 months ago
Alternatives and similar repositories for he2st
Users that are interested in he2st are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data☆25Updated this week
- DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and sin…☆88Jul 6, 2026Updated 2 weeks ago
- ☆12May 24, 2024Updated 2 years ago
- ☆13May 28, 2025Updated last year
- Implementation of GEFA: Early Fusion Approach in Drug-Target Affinity Prediction☆22Sep 30, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- ☆19Oct 28, 2025Updated 8 months ago
- Spatially-aware quality control for spatial transcriptomics☆16Oct 22, 2025Updated 9 months ago
- ☆52May 19, 2025Updated last year
- Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.☆32Jul 2, 2026Updated 2 weeks ago
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated last year
- A link prediction algorithm tailored to flow-driven spatial networks. Paper accepted @ WACV24.☆22Jan 18, 2024Updated 2 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- A large scale benchmark for cross-modal learning of histology and spatial expressions☆24Oct 28, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆23Aug 17, 2025Updated 11 months ago
- CSCS User Lab Day – Meet the Swiss National Supercomputing Centre☆13Sep 12, 2025Updated 10 months ago
- [WACV 2024] Domain Generalisation via Risk Distribution Matching☆23Sep 19, 2024Updated last year
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆16Dec 5, 2025Updated 7 months ago
- Joint Modelling Histology and Molecular Markers for Glioma Classification☆12Jun 4, 2025Updated last year
- BulkSignalR☆27Jun 23, 2026Updated 3 weeks ago
- [KDD 2023] Causal Inference via Style Transfer for Out-of-distribution Generalisation☆29Feb 29, 2024Updated 2 years ago
- An easy-to-use PyTorch library for Pathology Image ANalysis Orchestrator (PIANO), including generating patches from whole slide images, u…☆44Aug 24, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆18May 14, 2025Updated last year
- CELLama Project☆23Nov 15, 2025Updated 8 months ago
- [NeurIPS-2023] The PyTorch Implementation of MoSo. The algorithms are based on our paper: "Data Pruning via Moving-one-Sample-out". MoSo …☆10May 21, 2026Updated 2 months ago
- Causal Discovery via Bayesian Optimization (DrBO) - ICLR 2025☆24Apr 13, 2025Updated last year
- ☆10Jan 21, 2023Updated 3 years ago
- SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …☆44Apr 7, 2025Updated last year
- Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)☆35Nov 24, 2025Updated 7 months ago
- This script checks the WOKO website for student accommodation in Zurich for new room entries every 6 to 12 min and sends you an email ale…☆13Apr 24, 2024Updated 2 years ago
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆25Mar 12, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆38Mar 30, 2026Updated 3 months ago
- A synthesis pipeline for annotation-free blood vessel segmentation in cerebral 3D OCTA images. Paper accepted @ MICCAI24.☆30Aug 19, 2025Updated 11 months ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- ☆17Nov 8, 2024Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆67Mar 18, 2024Updated 2 years ago
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆53Jul 27, 2025Updated 11 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated last week