ratschlab / he2stLinks
Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"
☆10Updated 3 months ago
Alternatives and similar repositories for he2st
Users that are interested in he2st are comparing it to the libraries listed below
Sorting:
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆42Updated 2 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 5 months ago
- Reproducing the experiments of the DestVI paper☆19Updated 3 years ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆30Updated 4 months ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 11 months ago
- ☆11Updated 6 months ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆21Updated 5 months ago
- ☆13Updated 3 years ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆52Updated last month
- Multimodality Fusion Subtyping (Nature Communications)☆25Updated 4 months ago
- ☆34Updated 3 years ago
- ☆22Updated 2 years ago
- single cell analysis of treatment naive and treated human PDAC☆23Updated 3 years ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆24Updated 4 months ago
- ☆55Updated 2 years ago
- ☆34Updated last month
- ☆56Updated last year
- ☆12Updated 2 weeks ago
- ☆50Updated 3 months ago
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Updated 2 years ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆17Updated last week
- ☆22Updated 2 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated 3 weeks ago
- ☆33Updated 4 years ago
- ☆19Updated 3 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆58Updated last year
- Scanner of specific spatial patterns in tissues☆13Updated 3 years ago
- ☆45Updated 3 years ago
- ☆50Updated 5 months ago