Python interface for running COMETS simulations and analyzing the results
☆16Feb 24, 2026Updated last month
Alternatives and similar repositories for cometspy
Users that are interested in cometspy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computation of Microbial Ecosystems in Time and Space☆26Feb 26, 2026Updated last month
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Python package for creating, calibrating and simulating RBA models☆13Jun 5, 2023Updated 2 years ago
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- Python package for building and analyzing models using ModelSEED☆26Feb 11, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 12, 2024Updated last year
- From annotated genomes to metabolic screening in large scale microbiotas☆71Mar 26, 2026Updated 2 weeks ago
- agent based modelling☆35Aug 28, 2024Updated last year
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆67May 6, 2025Updated 11 months ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆13Aug 20, 2025Updated 7 months ago
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Apr 1, 2026Updated last week
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 5 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Mar 30, 2026Updated last week
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- ☆38Mar 26, 2025Updated last year
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- ☆47Jun 11, 2025Updated 10 months ago
- Community detection method for multidimensional networks☆11Mar 3, 2025Updated last year
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year
- Causal and probabilistic reasoning with continuous time dynamical systems☆20Aug 29, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15May 8, 2024Updated last year
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆21Jul 22, 2023Updated 2 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Oct 21, 2022Updated 3 years ago
- An R package for NASA’s GEDI Level 4A data download, processing and visualization.☆25Apr 3, 2023Updated 3 years ago
- A javascript library for building, exploring, and sharing spatially structured models of biological systems☆16Updated this week
- Release of the whole cell E. coli model.☆76Dec 10, 2024Updated last year
- The generic genome-scale metabolic model of Homo sapiens☆133Mar 30, 2026Updated last week
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆63Apr 2, 2026Updated last week
- Whole cell model of E. coli implemented with Vivarium☆29Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- A tool for semantics-based annotation and composition of biosimulation models☆20Jan 6, 2023Updated 3 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- ☆10Jul 4, 2019Updated 6 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Analysis of Microbial Growth Assays☆16Mar 12, 2025Updated last year
- ☆14Jun 30, 2024Updated last year