segrelab / cometspy
Python interface for running COMETS simulations and analyzing the results
☆12Updated 3 months ago
Alternatives and similar repositories for cometspy:
Users that are interested in cometspy are comparing it to the libraries listed below
- Python package for building and analyzing models using ModelSEED☆22Updated 2 weeks ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆60Updated 3 months ago
- Python package to study microbial communities using metabolic modeling.☆98Updated last week
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 2 months ago
- Python package for creating, calibrating and simulating RBA models☆12Updated last year
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 11 months ago
- memote – the genome-scale metabolic model test suite☆131Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 3 weeks ago
- ReFramed: metabolic modeling package☆58Updated last week
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 2 months ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆20Updated last month
- SMETANA: a tool to analyse interactions in microbial communities☆58Updated 4 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆166Updated 3 weeks ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 3 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆14Updated last year
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆27Updated 6 years ago
- Computation of Microbial Ecosystems in Time and Space☆24Updated 2 weeks ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…