segrelab / cometspyLinks
Python interface for running COMETS simulations and analyzing the results
☆12Updated 4 months ago
Alternatives and similar repositories for cometspy
Users that are interested in cometspy are comparing it to the libraries listed below
Sorting:
- Python package for building and analyzing models using ModelSEED☆23Updated 2 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 4 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆74Updated last month
- memote – the genome-scale metabolic model test suite☆133Updated last year
- Python package to study microbial communities using metabolic modeling.☆103Updated 2 weeks ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 4 months ago
- CarveMe: genome-scale metabolic model reconstruction☆172Updated 2 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 3 months ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆28Updated 6 years ago
- ReFramed: metabolic modeling package☆59Updated last month
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 3 months ago
- Computation of Microbial Ecosystems in Time and Space☆24Updated last week
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- A container for all enzyme constrained models created by GECKO.☆13Updated 2 years ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆21Updated last week
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated last month
- Enzyme-constrained genome-scale models in python☆28Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Updated last year
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- SMETANA: a tool to analyse interactions in microbial communities☆59Updated last month
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆15Updated 2 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆82Updated 7 months ago
- The BiGG Models website server☆83Updated 5 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆62Updated last month
- ☆9Updated last year
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated last month