Alternatives and similar repositories for ninjaMap

Users that are interested in ninjaMap are comparing it to the libraries listed below

• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 4 months ago
• gamcil / clustermap.js
  ☆31Updated 4 years ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated 2 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆30Updated 11 months ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• batmen-lab / SGPvalue
  ☆13Updated last year
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆23Updated last year
• zjshi / gt-pro
  ☆23Updated 2 years ago
• pg-space / panspace
  Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes
  ☆17Updated 3 weeks ago
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆20Updated 10 months ago
• wwood / OrfM
  simple and not slow ORF caller
  ☆21Updated last month
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated 2 months ago
• YDaiLab / MiMeNet
  ☆18Updated 5 years ago
• Ebedthan / xgt
  Efficient and fast querying and parsing of GTDB's data
  ☆29Updated 4 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆29Updated 8 months ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated last month
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 5 years ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆14Updated 7 months ago
• balabanmetin / uDance
  ☆43Updated last year
• refresh-bio / clusty
  ☆12Updated 7 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• jsevo / taxumap
  ☆16Updated 2 years ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆24Updated 2 years ago
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆21Updated last year
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated last month
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆38Updated 2 weeks ago