Automated synthetic microbial Community Design
☆13Mar 26, 2021Updated 4 years ago
Alternatives and similar repositories for AutoCD
Users that are interested in AutoCD are comparing it to the libraries listed below
Sorting:
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- ☆15Mar 16, 2020Updated 5 years ago
- ☆11Apr 17, 2025Updated 10 months ago
- ☆10Jul 4, 2019Updated 6 years ago
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Nov 24, 2025Updated 3 months ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Oct 21, 2022Updated 3 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19May 12, 2024Updated last year
- Python package for building and analyzing models using ModelSEED☆25Feb 11, 2026Updated 2 weeks ago
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Feb 13, 2026Updated 2 weeks ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆62Dec 22, 2025Updated 2 months ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆24Dec 19, 2023Updated 2 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆26May 21, 2025Updated 9 months ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆66Jan 6, 2026Updated last month
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- ReFramed: metabolic modeling package☆63Sep 16, 2025Updated 5 months ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆30Mar 5, 2019Updated 6 years ago
- ☆33Jan 21, 2026Updated last month
- The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installat…☆21Jan 3, 2013Updated 13 years ago
- 该项目主要功能为对受到成像设备及环境噪声干扰影响导致图像模糊及产生噪声干扰的图片进行修复。项目创建一个搭载在网页端的图像修复系统,用户将需要修复的图像上传到系统,系统经过处理后向用户输出修复的图片。项目基于CNN卷积神经网络,使用大量的数据集进行训练,从而优化处理能力,最终…☆14Jan 11, 2024Updated 2 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆67May 6, 2025Updated 9 months ago
- From annotated genomes to metabolic screening in large scale microbiotas☆69Jan 16, 2026Updated last month
- agent based modelling☆35Aug 28, 2024Updated last year
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆90Oct 9, 2025Updated 4 months ago
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆17Updated this week
- ☆38Mar 26, 2025Updated 11 months ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- pix2pix and Cycle GAN architectures for image style transfer☆13May 27, 2021Updated 4 years ago
- An R package containing the functions for the Open Bodem Index (OBI)☆13Feb 11, 2026Updated 2 weeks ago
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 4 months ago
- ☆13Aug 13, 2024Updated last year