ucl-cssb / AutoCDLinks
Automated synthetic microbial Community Design
☆13Updated 4 years ago
Alternatives and similar repositories for AutoCD
Users that are interested in AutoCD are comparing it to the libraries listed below
Sorting:
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆19Updated 5 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 3 years ago
- ☆11Updated 6 years ago
- metabolic heatmap☆21Updated 6 years ago
- ☆26Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 4 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆87Updated 2 months ago
- From metagenomes to epitopes and beyond☆12Updated last week
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- ☆37Updated last year
- ☆34Updated last year
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Updated last year
- A package to annotate protein sequences☆60Updated 8 months ago
- ☆41Updated 4 months ago
- ☆15Updated 2 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆29Updated 6 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- gutSMASH☆55Updated 3 weeks ago
- PaperBLAST: find papers about a protein or its homologs☆46Updated last month
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆65Updated 5 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- agent based modelling☆34Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- ☆18Updated 4 years ago