Alternatives and similar repositories for AutoCD

Users that are interested in AutoCD are comparing it to the libraries listed below

• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 5 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆18Updated 7 months ago
• Gibbons-Lab / scfa_predictions
  Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut
  ☆10Updated 11 months ago
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 3 years ago
• mikaells / RibDif
  Count and compare 16S rRNA genes within a genus
  ☆16Updated 10 months ago
• euba / BacArena
  agent based modelling
  ☆30Updated 9 months ago
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆24Updated 2 years ago
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆21Updated last year
• danielriosgarza / MAMBO
  ☆11Updated 5 years ago
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆20Updated 6 years ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆21Updated last year
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆26Updated last year
• jensenlab / BacterAI
  ☆25Updated last year
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated last month
• mendessoares / MMinte
  ☆16Updated 2 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• alexmsalmeida / metamap
  Snakemake workflow to map and quantify microbial genomes in metagenomic reads
  ☆12Updated last year
• hildebra / MATAFILER
  Metagenomic assembly, genome reconstruction and functional as well as taxonomic profiling
  ☆8Updated 9 months ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• mgtools / PhyloMint
  Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
  ☆12Updated 4 years ago
• ghzuo / CVTree
  A whole-genome and alignment-free prokaryotic phylogeny tool
  ☆23Updated 2 months ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 3 weeks ago
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆34Updated 2 years ago
• tamascogustavo / chimera
  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆18Updated 2 years ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆18Updated 6 years ago
• tpellegrinetti / PGPg_finder
  PGPg Finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …
  ☆19Updated last month
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated last year
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆58Updated 3 months ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago