Alternatives and similar repositories for omixer-rpm:

Users that are interested in omixer-rpm are comparing it to the libraries listed below

• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 2 months ago
• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 4 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated last month
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆27Updated 2 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆41Updated 4 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 2 months ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆29Updated last month
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆43Updated last week
• zhouhj1994 / LinDA
  ☆35Updated last year
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆56Updated 5 months ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆25Updated last year
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆30Updated 4 years ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 4 years ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆27Updated last year
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆21Updated last year
• knightlab-analyses / reference-frames
  ☆20Updated 4 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated 10 months ago
• metageni / SUPER-FOCUS
  A tool for agile functional analysis of shotgun metagenomic data
  ☆24Updated 5 months ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆54Updated 5 months ago
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆72Updated 4 months ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆43Updated 2 years ago
• segalab / SGVFinder
  ☆32Updated last year
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆31Updated 4 years ago
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 4 months ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆40Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆51Updated 4 years ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆20Updated last year
• omixer / omixer-rpmR
  An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
  ☆11Updated 2 years ago