Alternatives and similar repositories for omixer-rpm

Users that are interested in omixer-rpm are comparing it to the libraries listed below

• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 3 weeks ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆31Updated 3 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆31Updated 9 months ago
• omixer / omixer-rpmR
  An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
  ☆12Updated 2 years ago
• zhouhj1994 / LinDA
  ☆37Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 4 months ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated 4 months ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆58Updated last year
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆21Updated 6 years ago
• biocore / q2-greengenes2
  A QIIME 2 plugin for interaction with the Greengenes2 database
  ☆33Updated last year
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆43Updated 2 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆42Updated 4 years ago
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆22Updated 10 months ago
• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆19Updated 5 years ago
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆75Updated last month
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆27Updated last year
• gavinmdouglas / picrust2_manuscript
  ☆24Updated 5 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆66Updated last year
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆17Updated 7 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆41Updated last year
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆22Updated 2 years ago
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆21Updated 2 years ago
• Shenhav-and-Korem-labs / SCRuB
  ☆32Updated 9 months ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆91Updated last month
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated 2 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• YDaiLab / MiMeNet
  ☆18Updated 4 years ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆64Updated last month