Alternatives and similar repositories for MDSINE2

Users that are interested in MDSINE2 are comparing it to the libraries listed below

• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆30Updated 9 months ago
• bacteria-archaea-traits / bacteria-archaea-traits
  A synthesis of bacterial and archaeal phenotypic trait data
  ☆35Updated 2 years ago
• lch14forever / beem-static
  📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models
  ☆10Updated 4 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated 2 years ago
• knightlab-analyses / reference-frames
  ☆20Updated 5 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆23Updated 3 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆34Updated 5 years ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 6 months ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆27Updated 2 years ago
• statdivlab / radEmu
  ☆63Updated last month
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆73Updated 3 years ago
• reptalex / phylofactor
  ☆28Updated last year
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆61Updated 3 years ago
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated 6 months ago
• meringlab / FlashWeave.jl
  Inference of microbial interaction networks from large-scale heterogeneous abundance data
  ☆90Updated 4 months ago
• jlw-ecoevo / gRodon
  ☆18Updated 3 years ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆25Updated 2 years ago
• hallucigenia-sparsa / seqtime
  The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics
  ☆21Updated 3 years ago
• daisybio / namco
  ☆11Updated 9 months ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆39Updated 10 years ago
• statdivlab / stamps2019
  statdivlab's teaching materials for STAMPS @ the MBL in 2019
  ☆11Updated 6 years ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated last month
• McMahonLab / TaxAss
  16S taxonomy assignment using an ecosystem-specific database.
  ☆17Updated 2 years ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆129Updated 5 months ago
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆25Updated 2 years ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆47Updated 4 months ago
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆37Updated 3 years ago
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆18Updated 3 years ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆78Updated 6 months ago