☆35Jan 21, 2026Updated 3 months ago
Alternatives and similar repositories for MDSINE2
Users that are interested in MDSINE2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆10Apr 22, 2021Updated 5 years ago
- microbiome data simulation package☆22Oct 2, 2025Updated 7 months ago
- ☆13Dec 2, 2024Updated last year
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆28Feb 27, 2024Updated 2 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20Updated this week
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- ☆11Apr 17, 2025Updated last year
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆71Apr 24, 2026Updated last week
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated 11 months ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 4 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆92Oct 9, 2025Updated 6 months ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- ☆19Dec 11, 2024Updated last year
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Aug 24, 2021Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- agent based modelling☆35Aug 28, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- ☆65Apr 14, 2026Updated 2 weeks ago
- ☆20Jun 8, 2020Updated 5 years ago
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆230Apr 7, 2026Updated 3 weeks ago
- Compositional Lotka-Volterra☆16May 31, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A synthesis of bacterial and archaeal phenotypic trait data☆35Nov 9, 2023Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Dec 9, 2025Updated 4 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated last year
- ☆17May 13, 2025Updated 11 months ago
- Dirichlet-Multinomial Bayesian Variable Selection☆14Jun 13, 2024Updated last year
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year