gerberlab / MDSINE2Links
☆29Updated 2 months ago
Alternatives and similar repositories for MDSINE2
Users that are interested in MDSINE2 are comparing it to the libraries listed below
Sorting:
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 5 months ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Updated 4 years ago
- diversity estimation under ecological networks☆83Updated 2 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Plot microbiome time series in parallel☆26Updated last year
- ☆28Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 2 years ago
- ☆20Updated 5 years ago
- Species richness with high diversity☆67Updated 2 months ago
- ☆40Updated last year
- Various functions for analysis of microbial community data☆46Updated last week
- R package for microbial pangenomics☆24Updated 3 years ago
- ☆11Updated 5 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆125Updated last month
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 3 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Tools for visualising microbial community amplicon data☆69Updated last month
- ☆17Updated 2 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆89Updated this week
- dada2 formatted nifH database☆12Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago