gerberlab / MDSINE2Links
β23Updated 3 weeks ago
Alternatives and similar repositories for MDSINE2
Users that are interested in MDSINE2 are comparing it to the libraries listed below
Sorting:
- π¦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra modelsβ9Updated 3 years ago
- diversity estimation under ecological networksβ84Updated last week
- ALDEx_bioc is the working directory for updating bioconductorβ28Updated 3 months ago
- A synthesis of bacterial and archaeal phenotypic trait dataβ35Updated last year
- statdivlab's teaching materials for STAMPS @ the MBL in 2019β12Updated 6 years ago
- Species richness with high diversityβ67Updated this week
- Speedy versions of phyloseq functionsβ48Updated last year
- Functions for compositional analysis of high throughput sequencingβ29Updated last year
- Non parametric differential abundance tests for microbiome dataβ9Updated 4 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVAβ38Updated 9 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Updated 4 years ago
- β20Updated 5 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance dataβ124Updated 2 months ago
- Workshop for NGS'18 conference, Barcelona 2018β24Updated 6 years ago
- Count Regression for Correlated Observations with the Beta-binomialβ106Updated 4 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Dataβ24Updated 3 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USAβ35Updated 5 years ago
- Miscellaneous functions for metagenomic analysis.β50Updated 2 months ago
- Linear Decomposition Modelβ24Updated 2 years ago
- β56Updated last week
- β27Updated last year
- β11Updated 3 months ago
- Compare different differential abundance and expression methodsβ51Updated 3 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)β19Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or tβ¦β72Updated 2 years ago
- selbal: selection of balances for microbial signaturesβ32Updated 5 months ago
- A set of R scripts for the analysis of microbial profilesβ41Updated last year
- R package for computing alpha and beta contributional diversity metricsβ10Updated 2 years ago
- Simple R utilities for working with HMMERβ20Updated 10 months ago
- Robust Aitchison PCA from sparse count dataβ36Updated 2 years ago