☆24Oct 19, 2023Updated 2 years ago
Alternatives and similar repositories for cheshire-gapfilling
Users that are interested in cheshire-gapfilling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆24Feb 6, 2026Updated 2 months ago
- Enzyme-constrained genome-scale models in python☆37Oct 25, 2023Updated 2 years ago
- Python package for building and analyzing models using ModelSEED☆26Feb 11, 2026Updated 2 months ago
- SMETANA: a tool to analyse interactions in microbial communities☆68May 6, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ReFramed: metabolic modeling package☆63Sep 16, 2025Updated 7 months ago
- ☆15May 8, 2024Updated last year
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆63Apr 2, 2026Updated 2 weeks ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Oct 21, 2022Updated 3 years ago
- UniG-Encoder: A Universal Feature Encoder for Graph and Hypergraph Node Classification.☆13Jul 18, 2025Updated 9 months ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆18Mar 18, 2025Updated last year
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆17Mar 12, 2026Updated last month
- ☆27Dec 20, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- CarveMe: genome-scale metabolic model reconstruction☆202Sep 12, 2025Updated 7 months ago
- ☆20Jan 9, 2024Updated 2 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Mar 17, 2021Updated 5 years ago
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year
- A tutorial on cobrapy☆10Nov 23, 2022Updated 3 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20Updated this week
- The implementation of ICASSP 2024 lecture presentation paper "Hypergraph Transformer for Semi-Supervised Classification"☆20Nov 23, 2024Updated last year
- ☆20Dec 15, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Mar 12, 2025Updated last year
- Package that facilitates pulling database entries from KEGG via its REST API☆11Mar 20, 2026Updated 3 weeks ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆126Mar 25, 2026Updated 3 weeks ago
- ☆47Jun 11, 2025Updated 10 months ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆44Mar 26, 2026Updated 3 weeks ago
- From annotated genomes to metabolic screening in large scale microbiotas☆71Mar 26, 2026Updated 3 weeks ago
- Python interface for running COMETS simulations and analyzing the results☆16Feb 24, 2026Updated last month
- The BiGG Models website server☆89Nov 7, 2019Updated 6 years ago
- A simple python web app to visualise google location history☆16Jul 16, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A newly developed metabolic modeling pipeline, SuperCC, which could simulate the performances of different microbiomes.☆27Nov 21, 2025Updated 4 months ago
- Official implementation for paper: Probabilistically Rewired Message-Passing Neural Networks, accepted at ICLR 2024.☆20Jan 19, 2026Updated 3 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆85Mar 29, 2026Updated 3 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- The funny insult device for everyday use.☆16Updated this week
- Symbolic Kinetic Models with Python☆35Jun 4, 2025Updated 10 months ago
- Computation of Microbial Ecosystems in Time and Space☆26Feb 26, 2026Updated last month