canc1993 / cheshire-gapfilling
☆18Updated 11 months ago
Related projects: ⓘ
- Python package for building and analyzing models using ModelSEED☆17Updated last month
- ☆12Updated last year
- GCN classifier for phage taxanomy classification☆27Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆28Updated 2 weeks ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆52Updated 3 years ago
- ☆20Updated 8 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆25Updated 5 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆12Updated last month
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆29Updated last year
- Python Implementation of Codon Adaption Index☆32Updated last year
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆16Updated last year
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆12Updated 5 years ago
- Metagenome analysis using the Kraken software suite☆27Updated last year
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆13Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆22Updated last year
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆16Updated last year
- ☆49Updated 4 months ago
- A Pure-Python parser of HMMER3 output☆17Updated 8 years ago
- ☆35Updated 9 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆68Updated 6 months ago
- ☆10Updated 3 years ago
- Fast and flexible ORF finder☆54Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Updated last year
- Discovery of conserved gene clusters in multiple genomes☆42Updated last year
- PaperBLAST: find papers about a protein or its homologs☆33Updated last week
- Deep learning for Metagenome Assembly Error Detection☆25Updated 3 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆18Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆24Updated 5 months ago