☆18Dec 11, 2024Updated last year
Alternatives and similar repositories for MetaVF_toolkit
Users that are interested in MetaVF_toolkit are comparing it to the libraries listed below
Sorting:
- ☆18Jan 14, 2024Updated 2 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- Learning materials for the 3000788 Introduction to Computational Molecular Biology course☆23Nov 19, 2025Updated 4 months ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- A tutorial for Metagenome-Atlas☆23Nov 24, 2023Updated 2 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Tutorial for Metagenomics Analyses☆10Jun 16, 2020Updated 5 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. TOmicsVis — Transcriptome Visualization Process Scheme. Homepage: https://…☆16Aug 28, 2023Updated 2 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆14Feb 23, 2023Updated 3 years ago
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 5 months ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- gutSMASH☆58Oct 3, 2025Updated 5 months ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Updated this week
- ☆29May 2, 2024Updated last year
- ☆21Nov 13, 2019Updated 6 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Oct 5, 2021Updated 4 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆67May 6, 2025Updated 10 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Dec 2, 2022Updated 3 years ago
- Helper Functions for Interactive Tree Of Life (iTOL)☆182Nov 2, 2025Updated 4 months ago
- Executable files for usearch versions 5 through 11, donated to the public domain☆24Jun 15, 2024Updated last year
- 🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations☆32Mar 6, 2026Updated 2 weeks ago
- ☆34Jan 21, 2026Updated 2 months ago
- A script for comparing old vs new versions of genome annotations☆21Aug 1, 2023Updated 2 years ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 5 months ago
- The standard for open-source GEMs on GitHub☆21Oct 26, 2023Updated 2 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Cytoscape interface to STRING and STITCH☆11May 9, 2025Updated 10 months ago
- MGnify RESTful API☆10Feb 11, 2026Updated last month
- ☆10Dec 15, 2023Updated 2 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated last year
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- ProteoStorm: An Ultrafast Metaproteomics Database Search Framework☆11Jul 15, 2023Updated 2 years ago
- This package contains Perl programs/scripts that perform frequently needed operations on FASTA format files.☆16Apr 25, 2025Updated 10 months ago