☆23Dec 11, 2024Updated last year
Alternatives and similar repositories for MetaVF_toolkit
Users that are interested in MetaVF_toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jan 14, 2024Updated 2 years ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Updated this week
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- ☆16Jun 21, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multiple sequence aligner for protein and DNA/RNA.☆28Jan 3, 2018Updated 8 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆21Sep 2, 2025Updated 10 months ago
- ☆26Apr 20, 2023Updated 3 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆49Apr 14, 2020Updated 6 years ago
- ☆15Mar 14, 2023Updated 3 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated 2 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆18Oct 31, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 8 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 7 months ago
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆26Nov 3, 2025Updated 8 months ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆33Jun 17, 2024Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆42Feb 9, 2022Updated 4 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- MR project investigating the mediating role of mammographic density in the childhood body size and breast cancer relationship☆11May 14, 2024Updated 2 years ago
- Learning materials for the 3000788 Introduction to Computational Molecular Biology course☆24Jul 8, 2026Updated last week
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Locate antiviral defence systems in prokaryotic genomes☆75Oct 22, 2024Updated last year
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- CCLasso: Correlation Inference for Compositional Data through Lasso☆18Jan 8, 2016Updated 10 years ago
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- Systematic search of all known anti-phage systems.☆177May 5, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- PowerBacGWAS: Power calculations for Bacterial GWAS☆14Feb 2, 2022Updated 4 years ago
- Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA.…☆16Jul 14, 2026Updated last week
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Tutorial for Metagenomics Analyses☆10Jun 16, 2020Updated 6 years ago
- ☆36Apr 15, 2024Updated 2 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 5 months ago