COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
☆18May 6, 2026Updated 4 months ago
Alternatives and similar repositories for cobrar
Users that are interested in cobrar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆228Updated this week
- Python module for lipidomics LC MS/MS data analysis☆21Jun 27, 2024Updated 2 years ago
- GSimp is a Gibbs sampler-based missing value imputation approach☆20Sep 13, 2020Updated 6 years ago
- MOD-DOCKER is an open-source MOD DUO emulator for Linux based on Docker that lets you play around with hundreds of LV2 audio plugins!☆11Aug 10, 2023Updated 3 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This project extends R with a mechanism for efficient parallel data access by utilizing C++ shared memory. Large data objects can be acc…☆15May 4, 2026Updated 4 months ago
- Reproducible GSEA Benchmarking☆14May 14, 2026Updated 4 months ago
- ☆10Jan 22, 2026Updated 8 months ago
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated 3 months ago
- CarveMe: genome-scale metabolic model reconstruction☆222Sep 12, 2025Updated last year
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 4 months ago
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- ☆11Aug 12, 2026Updated last month
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- ☆11Aug 21, 2019Updated 7 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆28Mar 23, 2026Updated 6 months ago
- R Interface to the Metabolights REST API☆11Jun 10, 2026Updated 3 months ago
- Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.☆15Mar 3, 2025Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆32Jul 21, 2026Updated 2 months ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆14Mar 16, 2026Updated 6 months ago
- Swift Phenotypic Analysis of Cells☆11Jun 8, 2025Updated last year
- ⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline☆76Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated 2 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installat…☆21Jan 3, 2013Updated 13 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 10 months ago
- repository for ArduCamFocus octoprint plugin. Control an ArduCam focus from octoprint on an octopi.☆17Jun 24, 2021Updated 5 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆60May 7, 2026Updated 4 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆16Nov 7, 2024Updated last year
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆13Jun 28, 2024Updated 2 years ago
- ☆13Sep 17, 2026Updated last week
- Read, parse and operate different multiple input file formats with OpenVariant☆14Updated this week
- ☆22Sep 8, 2023Updated 3 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- ☆14May 29, 2024Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆17Apr 10, 2021Updated 5 years ago