Alternatives and similar repositories for cancersea

Users that are interested in cancersea are comparing it to the libraries listed below

• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• mbourgey / scRNA_GBM
  analysis script for GBM single cell RNA seq data
  ☆22Updated 4 years ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆29Updated 4 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆25Updated last year
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆53Updated 10 months ago
• zhang-bin-98 / A-spatial-transcriptome-landscape-of-mouse-aging
  ☆16Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆60Updated last year
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆20Updated 2 weeks ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆23Updated last year
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆20Updated last year
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆17Updated 3 years ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆43Updated 2 years ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆22Updated last year
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆20Updated last year
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 9 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆14Updated 2 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated 11 months ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆37Updated 2 years ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆22Updated 2 years ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆30Updated 2 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• ruoyan-li / RCC-spatial-mapping
  Code relating to http://dx.doi.org/10.2139/ssrn.4132721
  ☆11Updated 3 years ago
• yunguan-wang / Spacia
  ☆30Updated 6 months ago
• kaifuchenlab / MEBOCOST
  ☆29Updated this week
• wuaipinglab / scImmuCC
  Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
  ☆10Updated last year
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆14Updated last year
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆62Updated last year