Alternatives and similar repositories for cancersea:

Users that are interested in cancersea are comparing it to the libraries listed below

• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• mbourgey / scRNA_GBM
  analysis script for GBM single cell RNA seq data
  ☆18Updated 3 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 5 months ago
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆26Updated 5 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆22Updated last year
• ruoyan-li / RCC-spatial-mapping
  Code relating to http://dx.doi.org/10.2139/ssrn.4132721
  ☆10Updated 2 years ago
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆17Updated 7 months ago
• Pinlyu3 / IReNA-v2
  Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data
  ☆12Updated 3 years ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated last month
• soumelis-lab / ICELLNET
  ☆20Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆42Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 6 months ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆29Updated 8 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆25Updated 6 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 years ago
• qingnanl / gsdensity
  ☆9Updated 10 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆55Updated last year
• madhavmantri / chicken_heart
  Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis
  ☆14Updated last year
• dpeerlab / pdac-progression
  ☆10Updated 2 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 2 months ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 4 years ago
• quadbio / simspec
  Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
  ☆31Updated last year
• theislab / cellrank_reproducibility
  CellRank's reproducibility repository.
  ☆15Updated 3 years ago
• JSB-UCLA / scPNMF
  ☆13Updated last year
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆36Updated 4 years ago