a simple R data package for curated cancer pathway-specific gene lists
☆14Mar 31, 2020Updated 6 years ago
Alternatives and similar repositories for cancersea
Users that are interested in cancersea are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Sep 2, 2024Updated 2 years ago
- ☆12Jul 1, 2024Updated 2 years ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 5 months ago
- Advanced steps of the OSCA book☆17Aug 26, 2026Updated 2 months ago
- weighted indexes for clustering evaluation☆16Apr 18, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Create cancer bioinformatics reports from metadata and workflow output☆12Nov 5, 2026Updated last week
- ☆14Oct 14, 2022Updated 4 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 5 years ago
- An interpretable deep learning model for cancer classification using high-dimensional omics data☆18Jan 24, 2022Updated 4 years ago
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- Library for KEGG pathway enrichment analysis☆20Oct 26, 2026Updated 2 weeks ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated last year
- ☆17Sep 16, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆20May 23, 2025Updated last year
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 5 months ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆20Updated this week
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆60Aug 30, 2022Updated 4 years ago
- Population balance analysis☆47Apr 25, 2019Updated 7 years ago
- ☆10Nov 5, 2023Updated 3 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 8 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆19Apr 15, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆18Feb 20, 2025Updated last year
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆48Mar 6, 2026Updated 8 months ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆50Oct 22, 2021Updated 5 years ago
- ☆22Nov 9, 2023Updated 3 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 3 years ago
- ☆62Dec 27, 2023Updated 2 years ago
- A slimmed down version of scran, based on the C++ library of the same name.☆10Oct 15, 2024Updated 2 years ago
- Identifying tumor cells at the single-cell level using machine learning☆51Nov 10, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data☆25Feb 28, 2025Updated last year
- 命例☆10Sep 27, 2018Updated 8 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆115Feb 6, 2026Updated 9 months ago
- cTPnet Package☆28Jul 12, 2022Updated 4 years ago
- Utilities repository to analyze single-cell data from https://www.nature.com/articles/s41467-018-07261-3.☆10Feb 7, 2020Updated 6 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆32Oct 16, 2021Updated 5 years ago
- An algorithm for mapping cell state transitions.☆28Mar 3, 2023Updated 3 years ago
Are these results useful?