neherlab / pan-genome-visualizationLinks
Visualization of the pan-genome output by panX
☆64Updated 3 months ago
Alternatives and similar repositories for pan-genome-visualization
Users that are interested in pan-genome-visualization are comparing it to the libraries listed below
Sorting:
- Scalable creating/updating of metagenome profiling databases☆62Updated 2 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated last month
- ☆40Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- tree visualization for tree + annotation data☆40Updated 3 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Detection of NCLDV signatures in 'omic data☆34Updated last year
- Strain Resolution ON Graphs☆47Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆64Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- ☆27Updated 5 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 8 months ago
- Microbiome classification pipeline☆65Updated 4 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- ☆41Updated last year
- A package to annotate protein sequences☆59Updated 6 months ago
- ☆45Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- Discover and annotate the virome☆49Updated 3 weeks ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- visualising sequence similarity with Circos☆41Updated 6 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆60Updated 6 years ago