Visualization of the pan-genome output by panX
☆67Jun 16, 2025Updated 9 months ago
Alternatives and similar repositories for pan-genome-visualization
Users that are interested in pan-genome-visualization are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing pipeline for pan-genome visulization and exploration☆144Oct 9, 2023Updated 2 years ago
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 9 years ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 3 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pan-genome wide association studies☆213May 29, 2024Updated last year
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- ☆13Aug 30, 2023Updated 2 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Microbial Populations as Clusters Of Gene Transfer☆45Dec 4, 2023Updated 2 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆132Feb 26, 2024Updated 2 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 7 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 5 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated 3 months ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Application and Python module for average nucleotide identity analyses of microbes.☆216Jul 1, 2025Updated 9 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Jul 17, 2020Updated 5 years ago
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 3 months ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆77Dec 5, 2023Updated 2 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Updated this week
- Pan-genomic sequence analysis☆46Jul 11, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated 2 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated 3 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 3, 2022Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated 7 months ago