neherlab / pan-genome-visualizationLinks
Visualization of the pan-genome output by panX
☆64Updated 3 months ago
Alternatives and similar repositories for pan-genome-visualization
Users that are interested in pan-genome-visualization are comparing it to the libraries listed below
Sorting:
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last week
- Protein Alignment and Detection Interface☆60Updated last year
- tree visualization for tree + annotation data☆40Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 3 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated last month
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 2 weeks ago
- ☆41Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Strain Resolution ON Graphs☆47Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated last month
- ☆27Updated 5 years ago
- A package to annotate protein sequences☆59Updated 7 months ago
- visualising sequence similarity with Circos☆41Updated 6 years ago
- Interactive phylogenetic tree viewer/editor☆48Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last week
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 5 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆65Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago