neherlab / pan-genome-visualizationLinks
Visualization of the pan-genome output by panX
☆63Updated 3 weeks ago
Alternatives and similar repositories for pan-genome-visualization
Users that are interested in pan-genome-visualization are comparing it to the libraries listed below
Sorting:
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- Scalable creating/updating of metagenome profiling databases☆61Updated 3 weeks ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 weeks ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- ☆41Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- The Zika bioinformatics pipeline☆35Updated 5 years ago
- Reference-guided multiple sequence alignment of viral genomes☆69Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated 4 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 3 months ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated 2 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆48Updated 2 weeks ago
- A package to annotate protein sequences☆59Updated 4 months ago
- Interactive phylogenetic tree viewer/editor☆47Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Strain Resolution ON Graphs☆48Updated last year
- Graph-based assembly phasing☆85Updated 2 months ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago