blahah / assemblotronLinks
Automated optimisation of de-novo transcriptome assembly
☆25Updated 10 years ago
Alternatives and similar repositories for assemblotron
Users that are interested in assemblotron are comparing it to the libraries listed below
Sorting:
- blast, shmlast☆21Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- reference free variant assembly☆34Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- ☆18Updated 8 years ago
- Find Unique genomic Regions☆32Updated last week
- Reference genome quality scores☆20Updated 5 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 3 years ago
- Convert genbank files to a swath of other formats☆28Updated 3 weeks ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Scaffolding with RNA-seq read alignment☆21Updated 7 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated this week
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Read contamination removal☆25Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Validate and edit small eukaryotic genome assemblies☆32Updated 2 years ago