johnsolk / MMETSPLinks
re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project
☆13Updated 6 years ago
Alternatives and similar repositories for MMETSP
Users that are interested in MMETSP are comparing it to the libraries listed below
Sorting:
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- simple and not slow ORF caller☆21Updated 7 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Convert genbank files to a swath of other formats☆18Updated last year
- Protein Alignment and Detection Interface☆61Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆67Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Find Unique genomic Regions☆30Updated this week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 weeks ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- GC Skew Test for Bacterial Genomes☆30Updated 2 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- A phylogenetic profile analysis tool☆36Updated last month
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆45Updated last month