johnsolk / MMETSPLinks
re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project
☆13Updated 6 years ago
Alternatives and similar repositories for MMETSP
Users that are interested in MMETSP are comparing it to the libraries listed below
Sorting:
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Tools for analyzing trees☆14Updated 2 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Convert genbank files to a swath of other formats☆18Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- simple and not slow ORF caller☆21Updated 7 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- ☆22Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- De novo VIral Genome Annotator☆21Updated 9 months ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated last year
- Python package for common tasks in bioinformatic.☆13Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 7 months ago