johnsolk / MMETSP
re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project
☆13Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for MMETSP
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- Detect contigs of complete circular genomes☆21Updated 5 years ago
- simple and not slow ORF caller☆20Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- Tools for analyzing trees☆14Updated 11 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- GC Skew Test for Bacterial Genomes☆27Updated 2 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- Python package for common tasks in bioinformatic.☆13Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated last year
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Merge transcriptome assemblies☆30Updated 8 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- ☆21Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- ☆16Updated 3 weeks ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Find Unique genomic Regions☆29Updated this week
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 weeks ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- ☆19Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆29Updated 11 months ago