blahah / transrateLinks
Understand your transcriptome assembly
☆102Updated last year
Alternatives and similar repositories for transrate
Users that are interested in transrate are comparing it to the libraries listed below
Sorting:
- Software for clustering de novo assembled transcripts and counting overlapping reads☆73Updated 3 years ago
- Toolkit for processing TAB-delimited format☆62Updated 11 months ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 weeks ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 2 years ago
- ☆63Updated 4 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Maximum likelihood demultiplexing☆47Updated 7 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- ☆95Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated this week
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Coding Genome Reconstruction using Iso-Seq data☆61Updated 3 years ago
- ☆35Updated 2 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 9 months ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago