blahah / transrate
Understand your transcriptome assembly
☆101Updated last year
Alternatives and similar repositories for transrate:
Users that are interested in transrate are comparing it to the libraries listed below
- web documentation for Trinotate☆48Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Genome Annotation Without Nightmares☆44Updated 3 months ago
- ☆78Updated 11 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆92Updated 5 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 9 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Toolkit for processing TAB-delimited format☆62Updated 6 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆106Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆49Updated 4 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 8 years ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆48Updated last year
- PHAST☆73Updated this week
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆98Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago