blahah / transrateLinks
Understand your transcriptome assembly
☆102Updated last year
Alternatives and similar repositories for transrate
Users that are interested in transrate are comparing it to the libraries listed below
Sorting:
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- ☆96Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 5 years ago
- Toolkit for processing TAB-delimited format☆62Updated last year
- BAM Statistics, Feature Counting and Annotation☆152Updated last month
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- ☆122Updated 5 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Genomic Interactive Visualization Engine☆146Updated 3 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 8 months ago
- web documentation for Trinotate☆48Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 4 months ago
- ☆63Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago