harta55 / EnTAP
Eukaryotic Non-Model Transcriptome Annotation Pipeline - Latest Release v1.4.0 - Revamped final graphics coming soon!
☆37Updated this week
Related projects: ⓘ
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆57Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 7 months ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- A shiny application to visualize MCscan result☆31Updated last year
- ☆51Updated this week
- ☆24Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated 11 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- ☆32Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆47Updated last year
- Dinoflagellate Annotation Workflow☆11Updated last year
- A box of genomics tools☆21Updated 4 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 3 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆29Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆65Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆35Updated 11 months ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆13Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated 9 months ago
- Computational Analysis of Gene Expression Evolution☆34Updated this week
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆32Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆24Updated 3 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- Yet another Hi-C scaffolding tool☆19Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆23Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆31Updated 2 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆29Updated 4 months ago