cboursnell / transfuseLinks
Merge transcriptome assemblies
☆31Updated 9 years ago
Alternatives and similar repositories for transfuse
Users that are interested in transfuse are comparing it to the libraries listed below
Sorting:
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Updated 3 years ago
- Visualize whole genome alignments as linear maps☆74Updated 2 weeks ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Conditional Reciprocal Best Blast☆43Updated 8 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last month
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 3 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Genome Annotation Without Nightmares☆46Updated last week
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last week
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Assembly by Reduced Complexity (ARC)☆42Updated 9 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago