Alternatives and similar repositories for transfuse:

Users that are interested in transfuse are comparing it to the libraries listed below

• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• macmanes-lab / Oyster_River_Protocol
  Official Repository of the Oyster River Protocol for Transcriptome Assembly
  ☆16Updated 3 years ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• cboursnell / crb-blast
  Conditional Reciprocal Best Blast
  ☆42Updated 7 years ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆40Updated 2 years ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 8 years ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆71Updated 5 months ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆66Updated 7 years ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆43Updated last month
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆47Updated 5 years ago
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆56Updated 4 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 2 years ago
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆12Updated 8 years ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆50Updated 8 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆60Updated 4 years ago
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆30Updated 4 years ago
• josephhughes / Sequence-manipulation
  A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
  ☆28Updated last year
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆42Updated this week
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated 2 years ago
• mpdunne / orthofiller
  OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
  ☆22Updated 2 years ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆36Updated 7 years ago
• LANL-Bioinformatics / PhaME
  Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…
  ☆31Updated last year
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 2 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆37Updated 2 weeks ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated 8 months ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆55Updated last year