Merge transcriptome assemblies
☆30Oct 6, 2016Updated 9 years ago
Alternatives and similar repositories for transfuse
Users that are interested in transfuse are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Understand your transcriptome assembly☆101Mar 22, 2024Updated 2 years ago
- just annotate it, dammit!☆93Aug 22, 2023Updated 2 years ago
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Jan 22, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Building SuperTranscripts: A linear representation of transcriptome data☆66Mar 22, 2021Updated 5 years ago
- Official Repository of the Oyster River Protocol for Transcriptome Assembly☆17Aug 12, 2021Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated last month
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆50Mar 8, 2024Updated 2 years ago
- ☆10Apr 20, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆16Jul 7, 2025Updated 10 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- RNA-Seq☆24Aug 29, 2018Updated 7 years ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- Scripts☆10Jun 29, 2016Updated 9 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆112Jan 30, 2026Updated 3 months ago
- countsimQC - Compare characteristic features of count data sets☆30Apr 28, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Feb 14, 2023Updated 3 years ago
- Multi-sample transcriptome assembly from RNA-Seq☆25Jun 10, 2018Updated 7 years ago
- Error correction for Illumina RNA-seq reads☆67Jan 4, 2026Updated 4 months ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆46Nov 25, 2022Updated 3 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- pipeline for the analysis of small RNA data☆14Jun 24, 2019Updated 6 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆46Jun 18, 2019Updated 6 years ago
- Identification of structural variations☆12Jul 22, 2022Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆77Feb 11, 2022Updated 4 years ago
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago