A tool to analyze synteny at the protein level.
☆14Mar 28, 2018Updated 7 years ago
Alternatives and similar repositories for proteny
Users that are interested in proteny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Sep 5, 2017Updated 8 years ago
- ☆11Updated this week
- long-read depth breaking☆11Apr 19, 2018Updated 7 years ago
- ☆12Sep 11, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 5 years ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 2 months ago
- ☆28Dec 1, 2022Updated 3 years ago
- Conditional Reciprocal Best Blast☆43Mar 22, 2017Updated 9 years ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 5 years ago
- Robust Open Reading Frame prediction (ANGLE re-implementation)☆16Aug 2, 2021Updated 4 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated last year
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 7 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Dec 9, 2022Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Aug 30, 2016Updated 9 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- A box of genomics tools☆22Aug 26, 2020Updated 5 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆46Jun 18, 2019Updated 6 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆69Oct 29, 2020Updated 5 years ago
- Dockerfile for Apache Zeppelin☆17Dec 9, 2015Updated 10 years ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 8 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Apr 21, 2021Updated 4 years ago
- the notebook component of a PySpark application to calculate value-at-risk for a portfolio of securities☆11Jan 14, 2017Updated 9 years ago