Haploidy and Size Completeness Estimation
☆14Apr 11, 2024Updated 2 years ago
Alternatives and similar repositories for HapPy
Users that are interested in HapPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 2 months ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆44Apr 27, 2026Updated 2 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 6 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- HiFi error modeler and simulator with ploidy☆12Feb 12, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Mar 4, 2025Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆31Jul 13, 2026Updated last week
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Oct 1, 2024Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆16Oct 24, 2020Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- haplotypic duplication identification tool☆291Oct 30, 2025Updated 8 months ago
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year
- ☆15Aug 6, 2018Updated 7 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆32Apr 23, 2023Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated 3 weeks ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- ☆16Jun 12, 2020Updated 6 years ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 3 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆18Mar 14, 2022Updated 4 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- Transcript to Genome Consistency Network☆16Jun 19, 2012Updated 14 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆42May 18, 2026Updated 2 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 4 years ago
- ☆25Feb 24, 2026Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 4 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Extensive de-novo TE Annotator☆460Updated this week
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- k-mer based assembly evaluation☆349Jul 6, 2026Updated 2 weeks ago