Haploidy and Size Completeness Estimation
☆14Apr 11, 2024Updated 2 years ago
Alternatives and similar repositories for HapPy
Users that are interested in HapPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆43Updated this week
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- HiFi error modeler and simulator with ploidy☆11Feb 12, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆30Feb 23, 2026Updated 2 months ago
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Oct 1, 2024Updated last year
- ☆10Mar 4, 2025Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- Conditional Reciprocal Best Blast☆43Mar 22, 2017Updated 9 years ago
- haplotypic duplication identification tool☆283Oct 30, 2025Updated 6 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆16Oct 24, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Chromosome-level scaffolding using multiple references☆166Sep 8, 2024Updated last year
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 3 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- ☆15Jun 12, 2020Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated 3 weeks ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆17Mar 14, 2022Updated 4 years ago
- ☆15Aug 6, 2018Updated 7 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Feb 13, 2026Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆196May 11, 2025Updated 11 months ago
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 4 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 3 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A WGS de novo assembler based on the FMD-index for large genomes☆74Dec 6, 2013Updated 12 years ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆66Feb 23, 2020Updated 6 years ago
- Extensive de-novo TE Annotator☆444Apr 5, 2026Updated 3 weeks ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22May 20, 2024Updated last year
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year