Federating genomes with love (and synteny derived from functional annotations)
☆44Feb 25, 2026Updated last week
Alternatives and similar repositories for gcv
Users that are interested in gcv are comparing it to the libraries listed below
Sorting:
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 6 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- JBrowse plugin for methylation related things☆16Oct 9, 2018Updated 7 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Feb 22, 2022Updated 4 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Jan 12, 2026Updated last month
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆36Apr 16, 2024Updated last year
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 7 years ago
- A shiny application to visualize MCscan result☆38Oct 7, 2022Updated 3 years ago
- Modular Multi-scale Integrated Genome Graph Browser☆96Updated this week
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- JBrowse 1.x Plugin Registry☆14Sep 10, 2023Updated 2 years ago
- ☆68Feb 2, 2026Updated last month
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆47Jun 7, 2023Updated 2 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Apr 24, 2024Updated last year
- A fully automated gene annotator from RNA-Seq expression data☆61Jul 1, 2023Updated 2 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 26, 2026Updated last week
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- implicit pangenome graph☆90Updated this week
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆73Feb 19, 2019Updated 7 years ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆19Feb 28, 2022Updated 4 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 3 weeks ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆37Jan 3, 2026Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Jun 27, 2020Updated 5 years ago
- ☆101Apr 22, 2024Updated last year
- Transposable Elements Representation Learner (TERL)☆20Jun 2, 2025Updated 9 months ago
- ☆22May 24, 2016Updated 9 years ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆33Jul 12, 2020Updated 5 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆38Sep 14, 2025Updated 5 months ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆96Aug 11, 2025Updated 6 months ago