Alternatives and similar repositories for TILPRED

Users that are interested in TILPRED are comparing it to the libraries listed below

• ding-lab / PanCan_snATAC_publication
  ☆18Updated 10 months ago
• yunshun / HumanBreast10X
  ☆26Updated 3 years ago
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• camlab-bioml / cancersea
  a simple R data package for curated cancer pathway-specific gene lists
  ☆11Updated 5 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated last month
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated 3 months ago
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 3 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 3 weeks ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated last week
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆26Updated 3 years ago
• Precancer / SCC
  Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
  ☆16Updated 3 years ago
• Siliegia / SIGMA
  R package for SIGMA, a clusterability measure for scRNA-seq data
  ☆12Updated 3 years ago
• kkang7 / CDSeq_R_Package
  CDSeq R Package
  ☆20Updated 2 years ago
• BioBam / scMaSigPro
  Implementation of MaSigPro for scRNA-Seq Data
  ☆14Updated 10 months ago
• OSU-BMBL / scread-protocol
  ☆16Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• qingnanl / gsdensity
  ☆9Updated 11 months ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆24Updated 3 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆22Updated last year
• soumelis-lab / ICELLNET
  ☆20Updated last year
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆56Updated last year
• CamaraLab / ConDecon
  R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…
  ☆13Updated 8 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / ST-analysis
  General notes and resources on how to analyze Spatial Transcriptomics data
  ☆12Updated 2 years ago
• parveendabas / GBMatlas
  ☆18Updated 2 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago