carmonalab / TILPREDLinks
Tumor-Infiltrating CD8 Lymphocytes states prediction
☆12Updated last year
Alternatives and similar repositories for TILPRED
Users that are interested in TILPRED are comparing it to the libraries listed below
Sorting:
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- ☆26Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆17Updated 10 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆12Updated 7 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- ☆55Updated last year
- a simple R data package for curated cancer pathway-specific gene lists☆10Updated 5 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- CDSeq R Package☆20Updated 2 years ago
- ☆31Updated 4 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- ☆13Updated 10 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆14Updated 2 months ago
- ☆20Updated last year
- ☆29Updated 6 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆54Updated 5 months ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 3 years ago