A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data
☆10May 26, 2023Updated 2 years ago
Alternatives and similar repositories for SLICE
Users that are interested in SLICE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated last year
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 5 months ago
- ☆17Apr 4, 2026Updated last week
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated 11 months ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 2 years ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆17Apr 7, 2024Updated 2 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data☆18May 7, 2022Updated 3 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19May 24, 2021Updated 4 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Mar 25, 2024Updated 2 years ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆27Dec 10, 2025Updated 4 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆46Apr 12, 2023Updated 3 years ago
- ☆24Mar 3, 2026Updated last month
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆21Jul 19, 2022Updated 3 years ago
- BEER: Batch EffEct Remover for single-cell data☆24Jan 9, 2025Updated last year
- ☆25Aug 1, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pan-Cancer Single Cell Classifier☆85May 30, 2024Updated last year
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Nov 14, 2021Updated 4 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Ordering gene-expression and functional events in single-cell experiments☆30Mar 7, 2026Updated last month
- LORIS: A LOgistic Regression-based Immunotherapy-response Score☆16Nov 18, 2024Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆66Updated this week
- Ressources for Boinformatics Trainings☆13Nov 20, 2023Updated 2 years ago
- ☆32Dec 29, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Dec 4, 2025Updated 4 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Nov 3, 2022Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆34Apr 4, 2025Updated last year
- Highly informative TCR representation model☆15Nov 26, 2025Updated 4 months ago
- Raman2RNA code base.☆16Sep 8, 2023Updated 2 years ago
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago