vallotlab / ChromSCape
ChromSCape
☆14Updated 11 months ago
Alternatives and similar repositories for ChromSCape:
Users that are interested in ChromSCape are comparing it to the libraries listed below
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆19Updated last year
- Single-cell RNA Processing Software☆11Updated 3 months ago
- ☆20Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- HOT regions paper☆11Updated 5 years ago
- ☆12Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Collection of R functions used in the Hochwagen Lab☆11Updated 2 years ago
- ☆11Updated 5 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆17Updated 5 years ago
- ☆16Updated 4 years ago
- Advanced steps of the OSCA book☆12Updated last week
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- iread☆23Updated 3 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆11Updated 7 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆18Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 10 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- ☆15Updated 2 years ago