vallotlab / ChromSCapeLinks
ChromSCape
☆14Updated 6 months ago
Alternatives and similar repositories for ChromSCape
Users that are interested in ChromSCape are comparing it to the libraries listed below
Sorting:
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆20Updated 5 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆12Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- ☆19Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆29Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- ☆12Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 10 months ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- ☆20Updated 2 years ago
- Collection of R functions used in the Hochwagen Lab☆12Updated 6 months ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- scover☆24Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Peak caller for CUT&TAG data☆30Updated 3 years ago
- A collection of perl scripts for NGS analysis☆17Updated last year
- Single Cell RNA PolyA Site Discovery☆11Updated 2 weeks ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Updated 6 years ago
- ☆23Updated last year
- ☆25Updated 3 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 5 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Updated last year