Alternatives and similar repositories for ChromSCape

Users that are interested in ChromSCape are comparing it to the libraries listed below

• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆25Updated 2 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆18Updated 4 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 6 months ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• Vivianstats / MAAPER
  Model-based analysis of APA using 3' end-linked reads
  ☆10Updated 4 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• OSCA-source / OSCA.advanced
  Advanced steps of the OSCA book
  ☆13Updated 5 months ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆34Updated 3 years ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 2 weeks ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 6 years ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 5 years ago
• hochwagenlab / hwglabr2
  Collection of R functions used in the Hochwagen Lab
  ☆12Updated 2 months ago
• maxsonBraunLab / gopeaks
  Peak caller for CUT&TAG data
  ☆29Updated 3 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆16Updated last year
• hancockinformatics / pathlinkR
  Analysis and visualization of RNA-Seq results
  ☆30Updated last month
• shendurelab / mouse-atac
  Repo for website and other code for mouse sci-ATAC-seq project
  ☆28Updated 5 years ago
• remap-cisreg / ReMapEnrich
  ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…
  ☆15Updated 3 years ago
• lcalviell / ORFquant
  An R package for Splice-aware quantification of translation using Ribo-seq data
  ☆19Updated last year
• lucidif / HiCeekR
  R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface
  ☆16Updated 4 years ago
• kjgaulton / pipelines
  Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
  ☆27Updated 4 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 6 years ago
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 6 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆20Updated 6 months ago