vallotlab / ChromSCape
ChromSCape
☆14Updated last year
Alternatives and similar repositories for ChromSCape
Users that are interested in ChromSCape are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Model-based analysis of APA using 3' end-linked reads☆9Updated 3 years ago
- ☆17Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- ☆12Updated 5 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- ☆12Updated 11 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 4 years ago
- Advanced steps of the OSCA book☆13Updated 3 weeks ago
- ☆20Updated last year
- ☆17Updated 2 years ago
- ☆23Updated 2 years ago
- ☆22Updated 11 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Single-cell RNA Processing Software☆11Updated 6 months ago
- A collection of perl scripts for NGS analysis☆16Updated 7 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 2 weeks ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆15Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆12Updated 4 years ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆20Updated 4 years ago