WeersmaLabIBD / SingleCellLinks
☆9Updated last year
Alternatives and similar repositories for SingleCell
Users that are interested in SingleCell are comparing it to the libraries listed below
Sorting:
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 7 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- ☆16Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- Post hoc cell type classification of single-cell RNA-sequencing data.☆10Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆56Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆12Updated last year
- Supplementary software for "Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity"☆9Updated 7 years ago
- Scripts from the GBM cellular states paper☆18Updated 4 years ago
- Hierarchical classification of cells☆23Updated 10 months ago
- A repository of case studies using ProjecTILs☆14Updated 11 months ago
- ☆18Updated 10 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆14Updated 6 months ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆22Updated 3 years ago
- An R package for visualising cell-cell interactions☆44Updated 10 months ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 2 months ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆17Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago