WeersmaLabIBD / SingleCell
☆9Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SingleCell
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 2 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆23Updated 6 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Updated 6 years ago
- An R package for visualising cell-cell interactions☆39Updated 2 months ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 6 years ago
- ☆13Updated 3 months ago
- Scripts from the GBM cellular states paper☆18Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Collection of useful methods for single cell analysis☆14Updated 2 months ago
- Efficiently compute robust markers across single-cell datasets☆10Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆19Updated 5 years ago
- Supplementary software for "Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity"☆10Updated 6 years ago
- ☆53Updated 10 months ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆17Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated 4 months ago
- Lung cancer 10X analysis☆11Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆25Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated last year
- ☆19Updated 6 months ago
- A repository of case studies using ProjecTILs☆13Updated 3 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆32Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- deconvolution for RNAseq and bisulfite sequencing☆10Updated 4 years ago
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 4 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆16Updated 2 years ago