A repository of case studies using ProjecTILs
☆15Jul 26, 2024Updated last year
Alternatives and similar repositories for ProjecTILs_CaseStudies
Users that are interested in ProjecTILs_CaseStudies are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆316Dec 19, 2025Updated 4 months ago
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 4 years ago
- ☆22Mar 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Publication Page for ArchR Manuscript 2020☆23Aug 17, 2021Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆109Dec 18, 2025Updated 4 months ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Jan 14, 2024Updated 2 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- The source code of web server TIP, including example data.☆21Mar 28, 2019Updated 7 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 5 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- repository for the single cell RNA-Seq workshop☆31Apr 20, 2021Updated 5 years ago
- A 3-day R course given in University College Cork that encompasses various elements off reproducible research facilitated through RStudio…☆11Jun 17, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Mar 31, 2022Updated 4 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Aug 7, 2021Updated 4 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆182Dec 18, 2021Updated 4 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 2 years ago
- R package for single cell and other data analysis using diffusion maps☆99Apr 15, 2026Updated 2 weeks ago
- Cell type prioritization in single-cell data☆140Mar 26, 2026Updated last month
- Highly informative TCR representation model☆16Nov 26, 2025Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆236Mar 28, 2024Updated 2 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated last year
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated last month
- Quantifying metabolism activity at the single-cell resolution☆173Feb 18, 2026Updated 2 months ago
- ☆34Feb 25, 2020Updated 6 years ago
- Intro Shiny workshop given at R-Ladies Tunisia online meetup, July 4 2020☆11Jul 4, 2020Updated 5 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆41Sep 5, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 4 years ago
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 3 months ago
- ☆11Feb 9, 2024Updated 2 years ago
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆45Jul 27, 2025Updated 9 months ago
- circos pipeline☆20May 8, 2021Updated 4 years ago
- This is a one day intro to Shiny workshop for the R Conference 2020.☆16Oct 3, 2022Updated 3 years ago
- A Bayesian model for compositional single-cell data analysis☆195Jan 13, 2026Updated 3 months ago