carmonalab / ProjecTILs_CaseStudies
A repository of case studies using ProjecTILs
☆14Updated 6 months ago
Alternatives and similar repositories for ProjecTILs_CaseStudies:
Users that are interested in ProjecTILs_CaseStudies are comparing it to the libraries listed below
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- A database of useful gene signatures for single-cell analysis☆20Updated 10 months ago
- ☆13Updated 7 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 3 months ago
- ☆44Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆31Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆26Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- ☆38Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- ☆22Updated last year
- ☆13Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated this week
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Updated 9 months ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆32Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 2 months ago
- The source code of web server TIP, including example data.☆19Updated 5 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 4 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆15Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆56Updated 4 months ago
- ☆30Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago