alexandrovteam / SpaceMLinks
☆15Updated 9 months ago
Alternatives and similar repositories for SpaceM
Users that are interested in SpaceM are comparing it to the libraries listed below
Sorting:
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- ☆27Updated 8 months ago
- Analysis of smFISH data☆11Updated 6 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 3 weeks ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆16Updated last week
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆20Updated last month
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 4 years ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 7 months ago
- Helper functions for working with inForm data.☆17Updated 3 years ago
- SuperCell for Cytometry data☆12Updated last year
- MERFISH decoding software☆26Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated 3 weeks ago
- ☆13Updated last year
- ☆11Updated 6 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- ☆21Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last year
- ☆18Updated last year
- ☆12Updated 2 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago
- The algorithm, supervised Capacity Mapping (supCPM), to visualize scRNA-seq data☆7Updated 10 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆19Updated 2 months ago
- ☆25Updated 5 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆32Updated 2 weeks ago
- ☆22Updated 2 years ago
- Create PyTorch Datasets from AnnData☆20Updated 3 months ago
- Building Gene Sets and Mapping mFISH Data☆16Updated 2 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated last week