alexandrovteam / SpaceM
☆13Updated 6 months ago
Alternatives and similar repositories for SpaceM:
Users that are interested in SpaceM are comparing it to the libraries listed below
- ☆25Updated 5 months ago
- ☆13Updated last year
- Statistical analysis for spatial omics data☆10Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 4 months ago
- ☆11Updated 6 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- SuperCell for Cytometry data☆12Updated 11 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 4 months ago
- Analysis of smFISH data☆11Updated 6 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆25Updated 5 years ago
- ☆17Updated 11 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 6 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 weeks ago
- The algorithm, supervised Capacity Mapping (supCPM), to visualize scRNA-seq data☆7Updated 6 months ago
- ☆13Updated 2 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆26Updated 3 weeks ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated 3 months ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆21Updated last year
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆13Updated last year
- The complete FlowSOM package known from R, now available in Python!☆17Updated last month
- MERFISH decoding software☆26Updated last year
- CAST package☆32Updated 4 months ago
- ☆21Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 9 months ago
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated this week
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Updated 6 months ago
- Helper functions for working with inForm data.☆14Updated 2 years ago