☆17Sep 13, 2024Updated last year
Alternatives and similar repositories for SpaceM
Users that are interested in SpaceM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 4 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 9 months ago
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated 2 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- Framework for integrating heterogeneous modalities of data☆18Sep 17, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Sep 29, 2023Updated 2 years ago
- Spatially-aware quality control for spatial transcriptomics☆16Oct 22, 2025Updated 9 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆59Updated this week
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆124Aug 10, 2026Updated last week
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Jul 9, 2026Updated last month
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Sep 29, 2025Updated 10 months ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆16Feb 26, 2026Updated 5 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 3 weeks ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- ☆19May 5, 2023Updated 3 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 7 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆72Dec 2, 2025Updated 8 months ago
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated 3 months ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆34Jun 10, 2026Updated 2 months ago
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆23Nov 11, 2024Updated last year
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11May 6, 2021Updated 5 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆32Jan 5, 2025Updated last year
- AI-Driven Code Generation, Explanation and Execution for Data Analysis☆23Sep 11, 2024Updated last year
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 5 months ago
- ☆54Mar 7, 2023Updated 3 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 8 months ago