alexandrovteam / SpaceM
☆10Updated last week
Related projects: ⓘ
- ☆12Updated last year
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆21Updated 2 weeks ago
- Statistical analysis for spatial omics data☆10Updated 2 years ago
- ☆12Updated 5 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆32Updated this week
- ☆10Updated 7 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆26Updated 3 weeks ago
- Single cell proteomics data processing☆21Updated last month
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆9Updated last year
- Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling☆12Updated 2 months ago
- ☆19Updated 3 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Comparison of single cell normalization strategies☆10Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 2 years ago
- ☆20Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆9Updated 11 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆17Updated 5 months ago
- Spatial RNA velocity☆9Updated 7 months ago
- ☆14Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- ☆23Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆25Updated 3 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated 4 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆11Updated 5 months ago
- scRNAseq integration with triplet neural networks☆39Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated last year
- ☆16Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆19Updated 4 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆18Updated last week