Single Cell Epigenome-based Inference of Activity
☆19Sep 27, 2023Updated 2 years ago
Alternatives and similar repositories for scepia
Users that are interested in scepia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell ANANSE Gene-regulatory-network analysis from Seurat objects☆11Nov 12, 2023Updated 2 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆48Jul 20, 2022Updated 3 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- Single-Cell Clustering Assessment Framework☆110Oct 27, 2023Updated 2 years ago
- R package for wrapper functions, preprocessing, NMF and postprocessing☆12Oct 14, 2017Updated 8 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Jun 5, 2025Updated 11 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆48May 13, 2016Updated 10 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to visualize gene expression data based on weighted kernel density estimation☆114Feb 6, 2026Updated 3 months ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆169Feb 24, 2026Updated 2 months ago
- Trajectory inference and differential expression over multiple conditions in scRNA-seq☆26Apr 22, 2021Updated 5 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Mar 20, 2023Updated 3 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 9 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Apr 23, 2025Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated 10 months ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Apr 27, 2020Updated 6 years ago
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- code and data for Liu, Schilling, et al Nat Med 2019☆17Aug 1, 2024Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- genes and genomes at your fingertips☆412Mar 5, 2026Updated 2 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆323Nov 1, 2022Updated 3 years ago
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 4 months ago
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 3 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆41Nov 14, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10Aug 12, 2018Updated 7 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆45Mar 30, 2024Updated 2 years ago
- ☆14Mar 28, 2025Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 27, 2026Updated 3 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated last month
- Vaeda method for computational doublet annotation☆19Feb 1, 2026Updated 3 months ago