rs239 / schemaLinks
Framework for integrating heterogeneous modalities of data
☆17Updated 3 years ago
Alternatives and similar repositories for schema
Users that are interested in schema are comparing it to the libraries listed below
Sorting:
- Archetypal Analysis network (AAnet)☆37Updated 9 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- ☆15Updated 3 years ago
- Conditional out-of-distribution prediction☆63Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆22Updated 8 months ago
- ☆63Updated 2 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 2 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 10 months ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆24Updated 2 years ago
- ☆30Updated 3 years ago
- Functional and Learnable Cell dynamicS☆19Updated 5 months ago
- Learning disentangled representations of single-cell data for high-quality generation☆16Updated last year
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- ☆56Updated last year
- ☆19Updated 4 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆18Updated 3 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- SemI-SUpervised generative Autoencoder models for single cell data☆18Updated 4 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- Simple scVI implementation☆12Updated 2 weeks ago
- Dynamic inference from single-cell snapshots by optimal transport☆19Updated last year
- ☆100Updated last year
- A simulator for single-cell expression data guided by gene regulatory networks☆68Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago