rs239 / schemaLinks
Framework for integrating heterogeneous modalities of data
☆17Updated 3 years ago
Alternatives and similar repositories for schema
Users that are interested in schema are comparing it to the libraries listed below
Sorting:
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Updated 11 months ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25Updated 2 years ago
- Archetypal Analysis network (AAnet)☆40Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Updated 3 years ago
- Conditional out-of-distribution prediction☆62Updated last year
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25Updated 2 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Updated 3 years ago
- ☆15Updated 3 years ago
- ☆66Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆52Updated 4 years ago
- Latent spaces for single cells☆21Updated 2 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Updated 2 weeks ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆19Updated 3 years ago
- ☆71Updated 3 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 3 years ago
- Deep Generative Modeling of RNA Velocity☆37Updated 3 months ago
- SemI-SUpervised generative Autoencoder models for single cell data☆18Updated 4 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- ☆102Updated last year
- ☆17Updated 3 years ago
- Learning meaningful representations of genes☆21Updated 7 months ago
- Template repository for creating novel models with scvi-tools☆20Updated 3 years ago
- ☆30Updated 4 years ago
- ☆60Updated last year
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- generalized principal component analysis (GLM-PCA) implemented in python☆61Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Updated 5 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago