Framework for integrating heterogeneous modalities of data
☆17Sep 17, 2022Updated 3 years ago
Alternatives and similar repositories for schema
Users that are interested in schema are comparing it to the libraries listed below
Sorting:
- ☆16Sep 13, 2024Updated last year
- Diverse sampling for single-cell datasets☆16Jul 23, 2020Updated 5 years ago
- ☆20May 20, 2021Updated 4 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Feb 24, 2025Updated last year
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Robust Integration of Single-Cell Cytometry Datasets☆32Aug 29, 2025Updated 6 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- ☆30Oct 4, 2024Updated last year
- Multi-omic velocity inference☆116Oct 23, 2024Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- A public MuSpAn page for community discussions and issue reporting.☆19Jan 22, 2026Updated last month
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆18Nov 25, 2022Updated 3 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 4 years ago
- ☆13Jul 1, 2021Updated 4 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆100Feb 26, 2025Updated last year
- Reproducing result from the paper☆34May 12, 2021Updated 4 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Jul 7, 2022Updated 3 years ago
- ☆18May 5, 2023Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Jan 23, 2026Updated last month
- Genomic Features in Python from BioConductor's AnnotationHub☆22Feb 16, 2026Updated last week
- Material for the "Advanced topics in single-cell analysis" course (2022 edition)☆17May 20, 2022Updated 3 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Scripts capable of re-creating figures from Van Valen Lab publications☆18May 9, 2022Updated 3 years ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated 2 weeks ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆25Feb 2, 2026Updated 3 weeks ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- ☆67Jun 7, 2023Updated 2 years ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Sep 19, 2021Updated 4 years ago