Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets
☆14Nov 21, 2025Updated 3 months ago
Alternatives and similar repositories for PCprophet
Users that are interested in PCprophet are comparing it to the libraries listed below
Sorting:
- ☆17Apr 9, 2021Updated 4 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Mar 20, 2024Updated last year
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Alignment-Free methods Adjusted by Neural Network☆13Feb 20, 2020Updated 6 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Oct 5, 2023Updated 2 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 7 years ago
- ☆13Apr 18, 2022Updated 3 years ago
- Boltzmann machine learning for Potts models of biological data☆12Jul 24, 2024Updated last year
- ☆14Jan 31, 2020Updated 6 years ago
- A graph visualisation tool targeted at persistent homology applications.☆11Jul 28, 2020Updated 5 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 2 months ago
- web based visualisation of CLMS data☆13Nov 22, 2022Updated 3 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 10 months ago
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- ☆16Feb 17, 2025Updated last year
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 2 months ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 3 months ago
- ☆19Sep 20, 2021Updated 4 years ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 9 months ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆18Sep 16, 2021Updated 4 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Oct 15, 2021Updated 4 years ago
- Very large scale k-mer counting and analysis on Apache Spark.☆18Feb 22, 2026Updated last week
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- Convert ThermoFinningan RAW mass spectrometry files to the mzXML format☆17Nov 8, 2023Updated 2 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 3 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 6 months ago
- Official implementation of the paper "SAINT"☆17Mar 12, 2022Updated 3 years ago
- ☆20May 20, 2021Updated 4 years ago