Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets
☆14Nov 21, 2025Updated 4 months ago
Alternatives and similar repositories for PCprophet
Users that are interested in PCprophet are comparing it to the libraries listed below
Sorting:
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Mar 20, 2024Updated 2 years ago
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 3 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆30Mar 3, 2026Updated 2 weeks ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- web based visualisation of CLMS data☆13Nov 22, 2022Updated 3 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Updated this week
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Convert ThermoFinningan RAW mass spectrometry files to the mzXML format☆17Nov 8, 2023Updated 2 years ago
- ☆13Apr 18, 2022Updated 3 years ago
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Jan 7, 2026Updated 2 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 7 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆21Apr 20, 2025Updated 11 months ago
- ☆13Feb 14, 2023Updated 3 years ago
- DIA-BERT: a pre-trained model for data-independent acquisition mass spectrometry-based proteomics data analysis☆24Sep 3, 2025Updated 6 months ago
- ☆14Jan 31, 2020Updated 6 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Dec 21, 2021Updated 4 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- ☆12Jan 26, 2025Updated last year
- Alignment-Free methods Adjusted by Neural Network☆13Feb 20, 2020Updated 6 years ago
- Peptide Correlation analysis☆11Oct 3, 2024Updated last year
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Oct 15, 2021Updated 4 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 3 months ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- A graph visualisation tool targeted at persistent homology applications.☆11Jul 28, 2020Updated 5 years ago
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆28Jun 6, 2025Updated 9 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24May 30, 2023Updated 2 years ago
- Official implementation of the paper "SAINT"☆17Mar 12, 2022Updated 4 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 11 months ago
- A tool for large scale omics datasets evaluation☆23Jun 14, 2023Updated 2 years ago
- Instrument Application Programming Interface☆53Sep 29, 2025Updated 5 months ago